Man pages for lazappi/RNAtools
RNAtools - Functions for processing RNA-seq data
| combineMatrices | Combine Matrices |
| countBoxplots | Count Boxplot |
| countDensity | Count Density |
| countHeatmap | Count heatmap |
| countMA | Count MA |
| counts2DESeq | Counts to DESeq |
| counts2DESeq2 | Counts to DESeq2 |
| counts2edgeR | Counts to edgeR |
| counts2Objects | Counts to Objects |
| counts2voom | Counts to voom |
| cpmTransform | Counts Per Million transform counts |
| deseq2Norm | DESeq2 Normalise |
| deseq2Test | DESeq2 Test |
| deseqNorm | DESeq Normalise |
| deseqTest | DESeq Test |
| edgeRNorm | edgeR Normalise |
| edgeRTest | edgeR Test |
| geneSummary | Gene Summary |
| geneVenn | Gene Venn Diagram |
| heatmapDendro | Heatmap Dendrogram |
| heatmapLegend | Heatmap legend |
| jaccardTable | Jaccard Table |
| lengthenMatrix | Lengthen |
| listBoxplots | List Boxplots |
| listCountMA | List Count MA |
| listDensity | List Density |
| listHeatmaps | List Heatmaps |
| listMDS | List MDS |
| listNorm | List Normalise |
| listPCA | List PCA |
| listPlotPvals | List p-value plots |
| listRegularise | List Regularise |
| listResultsMA | List Results MA |
| listTest | List Test |
| listVolcano | List Volcano |
| logCPMTransform | Log Counts Per Million transform counts |
| logTransform | Log transform counts |
| makeHeatmap | Make Heatmap |
| plotFoldChange | Plot Fold Change |
| plotPvals | Plot p-values |
| regulariseResults | Regularise Results |
| resultsMA | Results MA |
| rlogTransform | Regularised log transform counts |
| sampleMDS | Sample MDS plot |
| samplePCA | Sample PCA Plot |
| setTable | Gene Set Table |
| showHeatmap | Show heatmap |
| transformCounts | Transform counts |
| vennGenes | Venn Genes |
| volcanoPlot | Volcano Plot |
| voomNorm | voom Normalise |
| voomTest | voom Test |
| vstTransform | VST transform counts |
