counts2Objects: Counts to Objects

In lazappi/RNAtools: RNAtools - Functions for processing RNA-seq data

Description

Convert a count matrix to objects required by various differential expression testing packages

Usage

counts2Objects(data, groups, filter, methods = c("edgeR", "DESeq", "DESeq2",
  "voom"), verbose = TRUE)

Arguments

data	Matrix of counts
groups	Vector of groups for each sample column
filter	Boolean, whether to use HTSFilter for voom
methods	Vector of object types to convert to
verbose	Boolean, whether to print messages showing progress

Value

List of converted objects

lazappi/RNAtools documentation built on May 20, 2019, 8:26 p.m.