extras/Documentation/RDcomp.md
In leeleavitt/procPharm: Constellation Pharmacology Data Analysis
RD file structure
The experiment are stored in an R list. If you have followed the instructions here follow the instruction here to view and understand each part of the experiment.
require(procpharm)
First change the working directory. Here i explicitly define the folder containing the experiment.
setwd("Y:/Lee Leavitt/Presentations/Paper/Figures/TTA A2 Dose Response/190531.39.m.m3.p2 ttaa2 potassium dose response comparison/")
Now that we are in the correct location load the experiment.
load("RD.190531.39.m.m3.p2.Rdata")
This function shows what has loaded into the workspace
ls()
'RD.190531.39.m.m3.p2'
This function define what type of object the experiment is,
class(RD.190531.39.m.m3.p2)
'list'
This function shows the names of all portions of the list
names(RD.190531.39.m.m3.p2)
- 't.dat'
- 't.340'
- 't.380'
- 'w.dat'
- 'c.dat'
- 'bin'
- 'scp'
- 'snr'
- 'blc'
- 'img1'
- 'img2'
- 'img3'
- 'img4'
- 'img5'
- 'img6'
- 'img7'
- 'img8'
- 'grps'
- 'cell.types'
- 'census'
RD experiment breakdown
- t.dat: data frame of the ratio of 340nM vs 380nM time series data for each cell
- t.340: data frame of the 340nM time series for each cell
- t.380: data frame of the 380nM time series for each cell
- w.dat: data frame defining the window region
- c.dat: data frame of all attributes defining the neuron based on the images
- bin: binary repsonse statistics for each cell for each window defined in w.dat
- scp: custom statistics for each window region for each cell,
- snr: signal to noise ratio
- tot: sum of all points within the window region
- max: maximum point within window region
- ph.a.r: peak-height/area
-
wm: where does the max occur within the window region
-
blc: baseline corrected trace
- img#: various image representations of the experiments.
- cell.types/cell_types: list of vectors of cell names.
Another way to understand what composes this experiment and to gain a better understanding is to use the lapply() function.
lapply(RD.190531.39.m.m3.p2, class)
$t.dat
'data.frame'
$t.340
'data.frame'
$t.380
'data.frame'
$w.dat
'data.frame'
$c.dat
'data.frame'
$bin
'data.frame'
$scp
'data.frame'
$snr
'data.frame'
$blc
'data.frame'
$img1
'array'
$img2
'array'
$img3
'array'
$img4
'array'
$img5
'array'
$img6
'array'
$img7
'array'
$img8
'array'
$grps
'integer'
$cell.types
'list'
$census
'list'
lapply(RD.190531.39.m.m3.p2, dim)
$t.dat
- 3184
- 2892
$t.340
- 3174
- 2892
$t.380
- 3174
- 2892
$w.dat
- 3184
- 3
$c.dat
- 2891
- 257
$bin
- 2891
- 25
$scp
- 2891
- 119
$snr
- 3184
- 2892
$blc
- 3184
- 2892
$img1
- 2048
- 2048
- 3
$img2
- 2048
- 2048
- 3
$img3
- 2048
- 2048
- 3
$img4
- 2048
- 2048
- 3
$img5
- 2048
- 2048
- 3
$img6
- 2048
- 2048
- 4
$img7
- 2048
- 2048
- 3
$img8
- 2048
- 2048
- 3
$grps
NULL
$cell.types
NULL
$census
NULL
Another way of dissecting the list to understand more is to use the str() function.
str(RD.190531.39.m.m3.p2)
List of 20
$ t.dat :'data.frame': 3184 obs. of 2892 variables:
..$ Time : num [1:3184] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3184] 0.525 0.521 0.519 0.525 0.521 ...
..$ X.2 : num [1:3184] 0.505 0.499 0.502 0.501 0.501 ...
..$ X.3 : num [1:3184] 0.635 0.639 0.64 0.655 0.658 ...
..$ X.4 : num [1:3184] 0.657 0.66 0.659 0.656 0.658 ...
..$ X.5 : num [1:3184] 0.576 0.565 0.556 0.559 0.571 ...
..$ X.6 : num [1:3184] 0.642 0.64 0.641 0.637 0.633 ...
..$ X.7 : num [1:3184] 0.482 0.48 0.481 0.482 0.484 ...
..$ X.8 : num [1:3184] 0.455 0.456 0.456 0.46 0.458 ...
..$ X.9 : num [1:3184] 0.466 0.462 0.468 0.466 0.464 ...
..$ X.10 : num [1:3184] 0.903 0.893 0.883 0.892 0.905 ...
..$ X.11 : num [1:3184] 0.482 0.476 0.477 0.481 0.48 ...
..$ X.12 : num [1:3184] 0.503 0.493 0.5 0.5 0.505 ...
..$ X.13 : num [1:3184] 0.518 0.515 0.512 0.515 0.515 ...
..$ X.14 : num [1:3184] 0.607 0.61 0.606 0.607 0.616 ...
..$ X.15 : num [1:3184] 0.457 0.457 0.457 0.457 0.46 ...
..$ X.16 : num [1:3184] 0.474 0.469 0.469 0.469 0.477 ...
..$ X.17 : num [1:3184] 0.475 0.473 0.474 0.471 0.476 ...
..$ X.18 : num [1:3184] 0.455 0.454 0.453 0.454 0.451 ...
..$ X.19 : num [1:3184] 0.609 0.6 0.604 0.603 0.609 ...
..$ X.20 : num [1:3184] 0.498 0.498 0.496 0.501 0.501 ...
..$ X.21 : num [1:3184] 0.508 0.509 0.514 0.512 0.512 ...
..$ X.22 : num [1:3184] 0.468 0.465 0.468 0.469 0.469 ...
..$ X.23 : num [1:3184] 0.467 0.463 0.468 0.469 0.47 ...
..$ X.24 : num [1:3184] 0.467 0.465 0.47 0.467 0.469 ...
..$ X.25 : num [1:3184] 0.438 0.438 0.436 0.44 0.437 ...
..$ X.26 : num [1:3184] 0.532 0.529 0.527 0.524 0.528 ...
..$ X.27 : num [1:3184] 0.624 0.623 0.625 0.622 0.627 ...
..$ X.28 : num [1:3184] 0.493 0.495 0.492 0.496 0.497 ...
..$ X.29 : num [1:3184] 0.466 0.463 0.468 0.466 0.47 ...
..$ X.30 : num [1:3184] 0.58 0.572 0.59 0.568 0.588 ...
..$ X.31 : num [1:3184] 0.552 0.552 0.553 0.554 0.556 ...
..$ X.32 : num [1:3184] 0.659 0.664 0.662 0.664 0.665 ...
..$ X.33 : num [1:3184] 0.597 0.592 0.595 0.596 0.591 ...
..$ X.34 : num [1:3184] 0.591 0.576 0.579 0.576 0.579 ...
..$ X.35 : num [1:3184] 0.571 0.571 0.571 0.568 0.562 ...
..$ X.36 : num [1:3184] 0.582 0.576 0.576 0.573 0.58 ...
..$ X.37 : num [1:3184] 0.647 0.653 0.658 0.652 0.666 ...
..$ X.38 : num [1:3184] 0.615 0.605 0.61 0.611 0.615 ...
..$ X.39 : num [1:3184] 0.514 0.512 0.51 0.515 0.514 ...
..$ X.40 : num [1:3184] 0.635 0.636 0.629 0.635 0.634 ...
..$ X.41 : num [1:3184] 0.677 0.669 0.666 0.677 0.673 ...
..$ X.42 : num [1:3184] 0.438 0.44 0.438 0.439 0.442 ...
..$ X.43 : num [1:3184] 0.575 0.568 0.574 0.573 0.569 ...
..$ X.44 : num [1:3184] 0.538 0.538 0.543 0.541 0.539 ...
..$ X.45 : num [1:3184] 0.581 0.572 0.58 0.579 0.583 ...
..$ X.46 : num [1:3184] 0.561 0.558 0.557 0.564 0.567 ...
..$ X.47 : num [1:3184] 0.532 0.531 0.525 0.541 0.537 ...
..$ X.48 : num [1:3184] 0.567 0.572 0.573 0.57 0.567 ...
..$ X.49 : num [1:3184] 0.64 0.633 0.633 0.644 0.637 ...
..$ X.50 : num [1:3184] 0.564 0.556 0.561 0.559 0.569 ...
..$ X.51 : num [1:3184] 0.474 0.47 0.477 0.475 0.473 ...
..$ X.52 : num [1:3184] 0.485 0.481 0.481 0.483 0.484 ...
..$ X.53 : num [1:3184] 0.634 0.637 0.619 0.634 0.63 ...
..$ X.54 : num [1:3184] 0.597 0.591 0.596 0.596 0.594 ...
..$ X.55 : num [1:3184] 0.573 0.573 0.568 0.575 0.573 ...
..$ X.56 : num [1:3184] 0.559 0.553 0.556 0.567 0.565 ...
..$ X.57 : num [1:3184] 0.595 0.586 0.596 0.592 0.586 ...
..$ X.58 : num [1:3184] 0.582 0.579 0.575 0.584 0.581 ...
..$ X.59 : num [1:3184] 0.563 0.555 0.564 0.56 0.562 ...
..$ X.60 : num [1:3184] 0.653 0.655 0.654 0.657 0.663 ...
..$ X.61 : num [1:3184] 0.582 0.578 0.58 0.586 0.584 ...
..$ X.62 : num [1:3184] 0.574 0.571 0.568 0.572 0.573 ...
..$ X.63 : num [1:3184] 0.559 0.556 0.558 0.557 0.56 ...
..$ X.64 : num [1:3184] 0.545 0.544 0.541 0.544 0.541 ...
..$ X.65 : num [1:3184] 0.552 0.55 0.555 0.546 0.553 ...
..$ X.66 : num [1:3184] 0.574 0.58 0.584 0.574 0.577 ...
..$ X.67 : num [1:3184] 0.453 0.451 0.452 0.454 0.454 ...
..$ X.68 : num [1:3184] 0.495 0.494 0.498 0.498 0.494 ...
..$ X.69 : num [1:3184] 0.538 0.531 0.531 0.538 0.532 ...
..$ X.70 : num [1:3184] 0.596 0.597 0.595 0.604 0.6 ...
..$ X.71 : num [1:3184] 0.504 0.5 0.503 0.501 0.504 ...
..$ X.72 : num [1:3184] 0.683 0.692 0.695 0.699 0.689 ...
..$ X.73 : num [1:3184] 0.607 0.611 0.607 0.608 0.637 ...
..$ X.74 : num [1:3184] 0.439 0.432 0.438 0.434 0.435 ...
..$ X.75 : num [1:3184] 0.529 0.529 0.529 0.529 0.531 ...
..$ X.76 : num [1:3184] 0.633 0.633 0.629 0.634 0.638 ...
..$ X.77 : num [1:3184] 0.624 0.618 0.619 0.619 0.615 ...
..$ X.78 : num [1:3184] 0.587 0.587 0.586 0.594 0.589 ...
..$ X.79 : num [1:3184] 0.535 0.534 0.541 0.541 0.533 ...
..$ X.80 : num [1:3184] 0.597 0.618 0.611 0.608 0.6 ...
..$ X.81 : num [1:3184] 0.663 0.664 0.661 0.666 0.665 ...
..$ X.82 : num [1:3184] 0.493 0.492 0.494 0.497 0.494 ...
..$ X.83 : num [1:3184] 0.481 0.478 0.479 0.481 0.478 ...
..$ X.84 : num [1:3184] 0.824 0.82 0.832 0.812 0.829 ...
..$ X.85 : num [1:3184] 0.592 0.581 0.583 0.582 0.584 ...
..$ X.86 : num [1:3184] 0.686 0.682 0.684 0.688 0.685 ...
..$ X.87 : num [1:3184] 0.567 0.564 0.568 0.574 0.569 ...
..$ X.88 : num [1:3184] 0.579 0.58 0.579 0.578 0.573 ...
..$ X.89 : num [1:3184] 0.512 0.514 0.513 0.516 0.512 ...
..$ X.90 : num [1:3184] 0.53 0.531 0.536 0.535 0.535 ...
..$ X.91 : num [1:3184] 0.605 0.594 0.591 0.597 0.605 ...
..$ X.92 : num [1:3184] 0.658 0.642 0.635 0.636 0.642 ...
..$ X.93 : num [1:3184] 0.653 0.652 0.66 0.663 0.656 ...
..$ X.94 : num [1:3184] 0.647 0.635 0.635 0.63 0.641 ...
..$ X.95 : num [1:3184] 0.608 0.603 0.608 0.61 0.62 ...
..$ X.96 : num [1:3184] 0.576 0.574 0.572 0.575 0.574 ...
..$ X.97 : num [1:3184] 0.465 0.463 0.462 0.464 0.467 ...
..$ X.98 : num [1:3184] 0.557 0.56 0.557 0.556 0.557 ...
.. [list output truncated]
$ t.340 :'data.frame': 3174 obs. of 2892 variables:
..$ Time : num [1:3174] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3174] 203 202 202 203 202 ...
..$ X.2 : num [1:3174] 213 211 213 212 212 ...
..$ X.3 : num [1:3174] 140 142 142 144 144 ...
..$ X.4 : num [1:3174] 141 142 142 141 140 ...
..$ X.5 : num [1:3174] 158 156 155 155 158 ...
..$ X.6 : num [1:3174] 148 148 147 147 146 ...
..$ X.7 : num [1:3174] 201 201 201 201 202 ...
..$ X.8 : num [1:3174] 225 226 226 227 226 ...
..$ X.9 : num [1:3174] 203 202 204 204 203 ...
..$ X.10 : num [1:3174] 114 114 114 115 114 ...
..$ X.11 : num [1:3174] 236 235 235 236 236 ...
..$ X.12 : num [1:3174] 171 170 172 170 172 ...
..$ X.13 : num [1:3174] 180 180 180 180 180 ...
..$ X.14 : num [1:3174] 146 147 147 147 147 ...
..$ X.15 : num [1:3174] 300 299 299 299 300 ...
..$ X.16 : num [1:3174] 187 187 186 188 188 ...
..$ X.17 : num [1:3174] 231 230 230 229 230 ...
..$ X.18 : num [1:3174] 234 234 233 234 233 ...
..$ X.19 : num [1:3174] 148 147 147 147 149 ...
..$ X.20 : num [1:3174] 216 216 215 217 217 ...
..$ X.21 : num [1:3174] 186 187 186 188 187 ...
..$ X.22 : num [1:3174] 217 218 218 219 218 ...
..$ X.23 : num [1:3174] 219 220 219 221 221 ...
..$ X.24 : num [1:3174] 204 204 205 204 205 ...
..$ X.25 : num [1:3174] 216 217 216 217 216 ...
..$ X.26 : num [1:3174] 226 225 224 224 224 ...
..$ X.27 : num [1:3174] 131 132 131 131 132 ...
..$ X.28 : num [1:3174] 175 174 173 174 174 ...
..$ X.29 : num [1:3174] 212 211 212 212 213 ...
..$ X.30 : num [1:3174] 154 155 155 153 155 ...
..$ X.31 : num [1:3174] 200 201 201 202 200 ...
..$ X.32 : num [1:3174] 141 141 140 140 140 ...
..$ X.33 : num [1:3174] 164 164 164 164 163 ...
..$ X.34 : num [1:3174] 209 208 208 207 208 ...
..$ X.35 : num [1:3174] 152 152 152 151 150 ...
..$ X.36 : num [1:3174] 161 159 158 159 160 ...
..$ X.37 : num [1:3174] 141 140 141 141 143 ...
..$ X.38 : num [1:3174] 148 146 146 147 146 ...
..$ X.39 : num [1:3174] 205 206 204 206 206 ...
..$ X.40 : num [1:3174] 144 144 143 144 144 ...
..$ X.41 : num [1:3174] 133 133 132 135 133 ...
..$ X.42 : num [1:3174] 233 235 233 235 235 ...
..$ X.43 : num [1:3174] 157 155 156 156 156 ...
..$ X.44 : num [1:3174] 199 199 199 199 199 ...
..$ X.45 : num [1:3174] 153 152 155 153 154 ...
..$ X.46 : num [1:3174] 170 170 169 171 172 ...
..$ X.47 : num [1:3174] 168 169 168 172 170 ...
..$ X.48 : num [1:3174] 223 223 224 223 222 ...
..$ X.49 : num [1:3174] 157 157 157 158 157 ...
..$ X.50 : num [1:3174] 184 184 184 185 186 ...
..$ X.51 : num [1:3174] 193 194 195 194 195 ...
..$ X.52 : num [1:3174] 243 242 242 243 243 ...
..$ X.53 : num [1:3174] 136 135 133 135 134 ...
..$ X.54 : num [1:3174] 152 154 154 154 153 ...
..$ X.55 : num [1:3174] 174 175 173 174 173 ...
..$ X.56 : num [1:3174] 139 137 138 138 139 ...
..$ X.57 : num [1:3174] 158 156 158 157 156 ...
..$ X.58 : num [1:3174] 152 152 152 152 152 ...
..$ X.59 : num [1:3174] 166 164 166 165 166 ...
..$ X.60 : num [1:3174] 128 128 128 128 128 ...
..$ X.61 : num [1:3174] 162 162 163 164 163 ...
..$ X.62 : num [1:3174] 174 174 175 175 174 ...
..$ X.63 : num [1:3174] 174 175 175 175 176 ...
..$ X.64 : num [1:3174] 233 232 233 234 231 ...
..$ X.65 : num [1:3174] 153 153 155 152 155 ...
..$ X.66 : num [1:3174] 132 133 133 133 133 ...
..$ X.67 : num [1:3174] 228 230 228 229 229 ...
..$ X.68 : num [1:3174] 213 213 214 214 213 ...
..$ X.69 : num [1:3174] 141 140 140 141 141 ...
..$ X.70 : num [1:3174] 160 160 160 162 160 ...
..$ X.71 : num [1:3174] 262 262 262 262 262 ...
..$ X.72 : num [1:3174] 131 132 131 132 130 ...
..$ X.73 : num [1:3174] 136 137 136 137 140 ...
..$ X.74 : num [1:3174] 242 240 244 241 240 ...
..$ X.75 : num [1:3174] 218 219 219 219 220 ...
..$ X.76 : num [1:3174] 233 232 234 234 234 ...
..$ X.77 : num [1:3174] 128 129 128 131 128 ...
..$ X.78 : num [1:3174] 152 152 152 153 153 ...
..$ X.79 : num [1:3174] 217 218 219 220 217 ...
..$ X.80 : num [1:3174] 133 136 135 134 132 ...
..$ X.81 : num [1:3174] 147 147 146 147 147 ...
..$ X.82 : num [1:3174] 203 202 203 203 202 ...
..$ X.83 : num [1:3174] 229 228 229 229 228 ...
..$ X.84 : num [1:3174] 106 105 105 104 106 ...
..$ X.85 : num [1:3174] 157 156 156 156 156 ...
..$ X.86 : num [1:3174] 147 147 146 147 146 ...
..$ X.87 : num [1:3174] 151 152 153 152 151 ...
..$ X.88 : num [1:3174] 168 168 168 168 166 ...
..$ X.89 : num [1:3174] 203 203 202 203 203 ...
..$ X.90 : num [1:3174] 176 177 177 178 177 ...
..$ X.91 : num [1:3174] 134 132 133 133 135 ...
..$ X.92 : num [1:3174] 165 163 164 161 163 ...
..$ X.93 : num [1:3174] 139 138 141 140 140 ...
..$ X.94 : num [1:3174] 133 132 132 131 132 ...
..$ X.95 : num [1:3174] 151 151 151 152 154 ...
..$ X.96 : num [1:3174] 158 156 154 157 156 ...
..$ X.97 : num [1:3174] 225 225 224 225 226 ...
..$ X.98 : num [1:3174] 171 173 172 171 173 ...
.. [list output truncated]
$ t.380 :'data.frame': 3174 obs. of 2892 variables:
..$ Time : num [1:3174] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3174] 387 388 388 387 388 ...
..$ X.2 : num [1:3174] 421 424 424 424 422 ...
..$ X.3 : num [1:3174] 220 222 221 219 219 ...
..$ X.4 : num [1:3174] 214 215 215 214 212 ...
..$ X.5 : num [1:3174] 274 276 279 277 276 ...
..$ X.6 : num [1:3174] 231 231 229 231 231 ...
..$ X.7 : num [1:3174] 417 419 418 416 417 ...
..$ X.8 : num [1:3174] 493 495 494 494 492 ...
..$ X.9 : num [1:3174] 435 438 437 437 437 ...
..$ X.10 : num [1:3174] 126 127 129 129 126 ...
..$ X.11 : num [1:3174] 490 495 493 491 491 ...
..$ X.12 : num [1:3174] 339 345 343 341 340 ...
..$ X.13 : num [1:3174] 348 349 351 349 349 ...
..$ X.14 : num [1:3174] 241 241 243 243 239 ...
..$ X.15 : num [1:3174] 655 654 653 655 652 ...
..$ X.16 : num [1:3174] 395 399 397 401 395 ...
..$ X.17 : num [1:3174] 486 487 485 486 484 ...
..$ X.18 : num [1:3174] 514 514 515 515 516 ...
..$ X.19 : num [1:3174] 243 245 243 244 244 ...
..$ X.20 : num [1:3174] 433 433 434 432 434 ...
..$ X.21 : num [1:3174] 365 367 363 366 366 ...
..$ X.22 : num [1:3174] 465 468 465 467 465 ...
..$ X.23 : num [1:3174] 470 475 469 471 470 ...
..$ X.24 : num [1:3174] 438 439 437 438 437 ...
..$ X.25 : num [1:3174] 493 495 495 493 494 ...
..$ X.26 : num [1:3174] 424 425 426 427 425 ...
..$ X.27 : num [1:3174] 210 212 210 211 210 ...
..$ X.28 : num [1:3174] 354 352 352 352 351 ...
..$ X.29 : num [1:3174] 454 456 454 455 453 ...
..$ X.30 : num [1:3174] 265 271 262 270 263 ...
..$ X.31 : num [1:3174] 363 365 363 364 361 ...
..$ X.32 : num [1:3174] 214 213 212 211 211 ...
..$ X.33 : num [1:3174] 276 276 275 276 276 ...
..$ X.34 : num [1:3174] 354 360 359 360 360 ...
..$ X.35 : num [1:3174] 266 267 265 266 267 ...
..$ X.36 : num [1:3174] 276 276 275 277 275 ...
..$ X.37 : num [1:3174] 218 215 215 217 214 ...
..$ X.38 : num [1:3174] 241 241 240 240 238 ...
..$ X.39 : num [1:3174] 400 403 400 400 400 ...
..$ X.40 : num [1:3174] 227 226 228 227 228 ...
..$ X.41 : num [1:3174] 197 199 199 200 198 ...
..$ X.42 : num [1:3174] 533 533 534 535 531 ...
..$ X.43 : num [1:3174] 272 273 271 272 274 ...
..$ X.44 : num [1:3174] 369 370 367 367 369 ...
..$ X.45 : num [1:3174] 264 266 267 265 265 ...
..$ X.46 : num [1:3174] 304 304 304 303 304 ...
..$ X.47 : num [1:3174] 315 318 320 318 317 ...
..$ X.48 : num [1:3174] 393 390 390 391 391 ...
..$ X.49 : num [1:3174] 245 248 248 246 247 ...
..$ X.50 : num [1:3174] 326 330 328 331 327 ...
..$ X.51 : num [1:3174] 408 413 408 408 411 ...
..$ X.52 : num [1:3174] 500 503 503 503 502 ...
..$ X.53 : num [1:3174] 215 212 215 214 212 ...
..$ X.54 : num [1:3174] 255 260 258 258 258 ...
..$ X.55 : num [1:3174] 303 305 305 303 302 ...
..$ X.56 : num [1:3174] 248 247 248 244 245 ...
..$ X.57 : num [1:3174] 265 266 264 266 266 ...
..$ X.58 : num [1:3174] 262 263 264 260 261 ...
..$ X.59 : num [1:3174] 294 296 295 295 295 ...
..$ X.60 : num [1:3174] 196 195 195 194 193 ...
..$ X.61 : num [1:3174] 279 281 281 279 279 ...
..$ X.62 : num [1:3174] 304 305 307 306 304 ...
..$ X.63 : num [1:3174] 312 314 313 314 314 ...
..$ X.64 : num [1:3174] 427 427 430 430 428 ...
..$ X.65 : num [1:3174] 278 277 279 278 279 ...
..$ X.66 : num [1:3174] 231 228 228 231 231 ...
..$ X.67 : num [1:3174] 504 509 505 505 505 ...
..$ X.68 : num [1:3174] 430 431 429 430 431 ...
..$ X.69 : num [1:3174] 262 264 263 262 265 ...
..$ X.70 : num [1:3174] 268 269 268 268 267 ...
..$ X.71 : num [1:3174] 520 523 521 523 520 ...
..$ X.72 : num [1:3174] 192 190 189 189 189 ...
..$ X.73 : num [1:3174] 224 224 225 225 220 ...
..$ X.74 : num [1:3174] 552 557 557 556 553 ...
..$ X.75 : num [1:3174] 413 414 414 414 413 ...
..$ X.76 : num [1:3174] 368 367 372 369 366 ...
..$ X.77 : num [1:3174] 205 209 207 211 208 ...
..$ X.78 : num [1:3174] 259 260 259 258 259 ...
..$ X.79 : num [1:3174] 405 408 405 406 407 ...
..$ X.80 : num [1:3174] 222 220 220 221 221 ...
..$ X.81 : num [1:3174] 221 221 220 220 221 ...
..$ X.82 : num [1:3174] 411 412 411 409 409 ...
..$ X.83 : num [1:3174] 475 476 478 476 476 ...
..$ X.84 : num [1:3174] 129 129 126 128 127 ...
..$ X.85 : num [1:3174] 265 268 267 267 266 ...
..$ X.86 : num [1:3174] 214 215 213 213 214 ...
..$ X.87 : num [1:3174] 267 269 270 265 266 ...
..$ X.88 : num [1:3174] 291 290 290 291 290 ...
..$ X.89 : num [1:3174] 396 395 394 394 396 ...
..$ X.90 : num [1:3174] 331 333 330 332 331 ...
..$ X.91 : num [1:3174] 222 222 224 222 223 ...
..$ X.92 : num [1:3174] 250 253 258 253 254 ...
..$ X.93 : num [1:3174] 214 212 213 211 213 ...
..$ X.94 : num [1:3174] 205 208 208 208 206 ...
..$ X.95 : num [1:3174] 248 250 248 248 247 ...
..$ X.96 : num [1:3174] 274 271 270 274 271 ...
..$ X.97 : num [1:3174] 484 487 485 485 485 ...
..$ X.98 : num [1:3174] 307 309 309 309 310 ...
.. [list output truncated]
$ w.dat :'data.frame': 3184 obs. of 3 variables:
..$ Time : num [1:3184] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ wr1 : chr [1:3184] "" "" "" "" ...
..$ ignore: num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
$ c.dat :'data.frame': 2891 obs. of 257 variables:
..$ id : chr [1:2891] "X.1" "X.2" "X.3" "X.4" ...
..$ area : num [1:2891] 263.2 339.6 42.2 89.4 65 ...
..$ center.x.simplified : num [1:2891] 464 976 597 251 819 ...
..$ center.y.simplified : num [1:2891] 12 12 13 16 14 15 16 17 21 21 ...
..$ circularity : num [1:2891] 0.96 0.952 0.792 0.62 1.025 ...
..$ perimeter : num [1:2891] 46 52.5 20.3 33.4 22.1 ...
..$ mean.bf.end : num [1:2891] 0.0231 0.0262 0.0188 0.0223 0.0274 ...
..$ mean.bf.start : num [1:2891] 0.0214 0.0247 0.0236 0.0233 0.0257 ...
..$ mean.gfp.end : num [1:2891] 0.00156 0.00157 0.00159 0.00155 0.00158 ...
..$ mean.gfp.start : num [1:2891] 0.00157 0.00157 0.00156 0.00155 0.00156 ...
..$ mean.dapi : num [1:2891] 0.00506 0.00468 0.00332 0.00394 0.00386 ...
..$ mean.cy5.end : num [1:2891] 0.00409 0.00604 0.00301 0.00264 0.00286 ...
..$ center.x : num [1:2891] 464 975 597 251 818 ...
..$ center.y : num [1:2891] 11.7 11.9 12.9 14 14.2 ...
..$ ImageNumber : int [1:2891] 2 2 2 2 2 2 2 2 2 2 ...
..$ ObjectNumber : int [1:2891] 1 2 3 4 5 6 7 8 9 10 ...
..$ AreaShape_Area : int [1:2891] 162 209 26 55 40 44 500 185 132 29 ...
..$ AreaShape_Center_X : num [1:2891] 464 976 597 251 819 ...
..$ AreaShape_Center_Y : num [1:2891] 12 12 13 16 14 15 16 17 21 21 ...
..$ AreaShape_Compactness : num [1:2891] 1 1 1.1 1.28 1.02 ...
..$ AreaShape_Eccentricity : num [1:2891] 0.287 0.374 0.774 0.838 0.626 ...
..$ AreaShape_EulerNumber : num [1:2891] 1 1 1 1 1 1 1 1 1 1 ...
..$ AreaShape_Extent : num [1:2891] 0.827 0.768 0.743 0.655 0.833 ...
..$ AreaShape_FormFactor : num [1:2891] 0.96 0.952 0.792 0.62 1.025 ...
..$ AreaShape_MajorAxisLength : num [1:2891] 14.73 17 7.31 11.85 8.13 ...
..$ AreaShape_MaxFeretDiameter : num [1:2891] 14.42 16.76 6.32 11.4 7.28 ...
..$ AreaShape_MaximumRadius : num [1:2891] 6.71 7.62 2.24 3.16 3 ...
..$ AreaShape_MeanRadius : num [1:2891] 2.76 3.05 1.34 1.54 1.61 ...
..$ AreaShape_MedianRadius : num [1:2891] 2.24 2.83 1 1.41 1.41 ...
..$ AreaShape_MinFeretDiameter : num [1:2891] 13 14.8 4 6 5 ...
..$ AreaShape_MinorAxisLength : num [1:2891] 14.11 15.76 4.63 6.46 6.34 ...
..$ AreaShape_Orientation : num [1:2891] -54 74.6 85.5 72.6 90 ...
..$ AreaShape_Perimeter : num [1:2891] 46 52.5 20.3 33.4 22.1 ...
..$ AreaShape_Solidity : num [1:2891] 0.945 0.939 0.881 0.88 0.93 ...
..$ AreaShape_Zernike_0_0 : num [1:2891] 0.991 0.947 0.828 0.539 0.895 ...
..$ AreaShape_Zernike_1_1 : num [1:2891] 0.03623 0.0132 0.09549 0.05161 0.00274 ...
..$ AreaShape_Zernike_2_0 : num [1:2891] 0.00667 0.04733 0.05093 0.15686 0.0785 ...
..$ AreaShape_Zernike_2_2 : num [1:2891] 0.0199 0.0342 0.154 0.1066 0.0824 ...
..$ AreaShape_Zernike_3_1 : num [1:2891] 0.0328 0.0117 0.0308 0.0178 0.0106 ...
..$ AreaShape_Zernike_3_3 : num [1:2891] 0.0179 0.0117 0.0573 0.017 0.0392 ...
..$ AreaShape_Zernike_4_0 : num [1:2891] 0.00181 0.03702 0.0713 0.02299 0.03078 ...
..$ AreaShape_Zernike_4_2 : num [1:2891] 0.0201 0.0304 0.0936 0.0245 0.0615 ...
..$ AreaShape_Zernike_4_4 : num [1:2891] 0.0133 0.0202 0.0509 0.0448 0.0134 ...
..$ AreaShape_Zernike_5_1 : num [1:2891] 0.027 0.00943 0.03522 0.00602 0.0265 ...
..$ AreaShape_Zernike_5_3 : num [1:2891] 0.01642 0.00946 0.03696 0.03457 0.04162 ...
..$ AreaShape_Zernike_5_5 : num [1:2891] 0.01019 0.00942 0.00201 0.01054 0.02942 ...
..$ AreaShape_Zernike_6_0 : num [1:2891] 0.00437 0.02396 0.11714 0.02337 0.02324 ...
..$ AreaShape_Zernike_6_2 : num [1:2891] 0.02062 0.02515 0.08246 0.00957 0.03914 ...
..$ AreaShape_Zernike_6_4 : num [1:2891] 0.0113 0.0146 0.0528 0.0118 0.045 ...
..$ AreaShape_Zernike_6_6 : num [1:2891] 0.0116 0.0019 0.0303 0.0272 0.0556 ...
..$ AreaShape_Zernike_7_1 : num [1:2891] 0.0189 0.0067 0.0308 0.01 0.0518 ...
..$ AreaShape_Zernike_7_3 : num [1:2891] 0.01371 0.00679 0.01947 0.02186 0.04755 ...
..$ AreaShape_Zernike_7_5 : num [1:2891] 0.00473 0.00683 0.06125 0.01087 0.0387 ...
..$ AreaShape_Zernike_7_7 : num [1:2891] 0.00943 0.00665 0.02228 0.00703 0.01108 ...
..$ AreaShape_Zernike_8_0 : num [1:2891] 0.0105 0.0105 0.1061 0.0208 0.0591 ...
..$ AreaShape_Zernike_8_2 : num [1:2891] 0.0215 0.0186 0.0801 0.0232 0.0251 ...
..$ AreaShape_Zernike_8_4 : num [1:2891] 0.0106 0.0108 0.0712 0.0119 0.061 ...
..$ AreaShape_Zernike_8_6 : num [1:2891] 0.00982 0.00514 0.02986 0.02065 0.02814 ...
..$ AreaShape_Zernike_8_8 : num [1:2891] 0.00326 0.00427 0.02577 0.02041 0.04746 ...
..$ AreaShape_Zernike_9_1 : num [1:2891] 0.0089 0.00388 0.03216 0.0014 0.08 ...
..$ AreaShape_Zernike_9_3 : num [1:2891] 0.00959 0.00408 0.01898 0.0058 0.05386 ...
..$ AreaShape_Zernike_9_5 : num [1:2891] 0.00341 0.00428 0.03611 0.00843 0.04807 ...
..$ AreaShape_Zernike_9_7 : num [1:2891] 0.00334 0.00421 0.02949 0.00687 0.03151 ...
..$ AreaShape_Zernike_9_9 : num [1:2891] 0.00203 0.00371 0.03838 0.00536 0.00593 ...
..$ Intensity_IntegratedIntensityEdge_BF_end : num [1:2891] 1.163 1.634 0.384 0.804 0.648 ...
..$ Intensity_IntegratedIntensityEdge_BF_start : num [1:2891] 0.898 1.43 0.442 0.807 0.628 ...
..$ Intensity_IntegratedIntensityEdge_CGRP_end_ci : num [1:2891] 0.0811 0.0964 0.0304 0.0543 0.0379 ...
..$ Intensity_IntegratedIntensityEdge_CGRP_start_ci : num [1:2891] 0.0814 0.0968 0.0297 0.0543 0.0374 ...
..$ Intensity_IntegratedIntensityEdge_DAPI_ci : num [1:2891] 0.1483 0.167 0.0618 0.12 0.0837 ...
..$ Intensity_IntegratedIntensityEdge_IB4_end_ci : num [1:2891] 0.2054 0.3449 0.0569 0.0924 0.0688 ...
..$ Intensity_IntegratedIntensityEdge_f2_340_end_ci : num [1:2891] 0.1494 0.1938 0.0567 0.0982 0.071 ...
..$ Intensity_IntegratedIntensityEdge_f2_340_start_ci: num [1:2891] 0.1429 0.1723 0.0498 0.0855 0.0625 ...
..$ Intensity_IntegratedIntensityEdge_f2_380_end_ci : num [1:2891] 0.2416 0.2585 0.0864 0.1655 0.1239 ...
..$ Intensity_IntegratedIntensityEdge_f2_380_start_ci: num [1:2891] 0.2447 0.2927 0.0884 0.1444 0.1126 ...
..$ Intensity_IntegratedIntensity_BF_end : num [1:2891] 3.741 5.466 0.489 1.227 1.095 ...
..$ Intensity_IntegratedIntensity_BF_start : num [1:2891] 3.468 5.172 0.613 1.282 1.027 ...
..$ Intensity_IntegratedIntensity_CGRP_end_ci : num [1:2891] 0.2535 0.3271 0.0415 0.0853 0.0631 ...
..$ Intensity_IntegratedIntensity_CGRP_start_ci : num [1:2891] 0.255 0.3274 0.0407 0.0853 0.0624 ...
..$ Intensity_IntegratedIntensity_DAPI_ci : num [1:2891] 0.8193 0.9775 0.0864 0.2169 0.1543 ...
..$ Intensity_IntegratedIntensity_IB4_end_ci : num [1:2891] 0.6627 1.262 0.0781 0.1451 0.1143 ...
..$ Intensity_IntegratedIntensity_f2_340_end_ci : num [1:2891] 0.6991 0.9908 0.0799 0.1661 0.1265 ...
..$ Intensity_IntegratedIntensity_f2_340_start_ci : num [1:2891] 0.7176 0.9892 0.0749 0.1469 0.1242 ...
..$ Intensity_IntegratedIntensity_f2_380_end_ci : num [1:2891] 1.412 1.606 0.123 0.294 0.233 ...
..$ Intensity_IntegratedIntensity_f2_380_start_ci : num [1:2891] 1.551 2.181 0.141 0.266 0.255 ...
..$ Intensity_LowerQuartileIntensity_BF_end : num [1:2891] 0.0185 0.0205 0.014 0.0178 0.0212 ...
..$ Intensity_LowerQuartileIntensity_BF_start : num [1:2891] 0.0162 0.0188 0.022 0.0197 0.0225 ...
..$ Intensity_LowerQuartileIntensity_CGRP_end_ci : num [1:2891] 0.00155 0.00155 0.00156 0.00154 0.00156 ...
..$ Intensity_LowerQuartileIntensity_CGRP_start_ci : num [1:2891] 0.00156 0.00155 0.00155 0.00154 0.00155 ...
..$ Intensity_LowerQuartileIntensity_DAPI_ci : num [1:2891] 0.00322 0.00295 0.00291 0.00295 0.00262 ...
..$ Intensity_LowerQuartileIntensity_IB4_end_ci : num [1:2891] 0.00372 0.00443 0.00292 0.00259 0.00281 ...
..$ Intensity_LowerQuartileIntensity_f2_340_end_ci : num [1:2891] 0.00324 0.00337 0.00267 0.00272 0.00252 ...
..$ Intensity_LowerQuartileIntensity_f2_340_start_ci : num [1:2891] 0.00315 0.0034 0.00251 0.0024 0.00247 ...
..$ Intensity_LowerQuartileIntensity_f2_380_end_ci : num [1:2891] 0.0054 0.00471 0.00356 0.00454 0.00381 ...
..$ Intensity_LowerQuartileIntensity_f2_380_start_ci : num [1:2891] 0.00578 0.0064 0.00429 0.00394 0.00417 ...
..$ Intensity_MADIntensity_BF_end : num [1:2891] 0.00432 0.0055 0.0041 0.0046 0.00627 ...
..$ Intensity_MADIntensity_BF_start : num [1:2891] 0.00526 0.00524 0.00201 0.00501 0.00354 ...
..$ Intensity_MADIntensity_CGRP_end_ci : num [1:2891] 1.51e-05 1.50e-05 1.52e-05 1.53e-05 1.53e-05 ...
..$ Intensity_MADIntensity_CGRP_start_ci : num [1:2891] 1.49e-05 1.50e-05 1.51e-05 1.53e-05 1.50e-05 ...
..$ Intensity_MADIntensity_DAPI_ci : num [1:2891] 0.001611 0.00161 0.000448 0.000763 0.000882 ...
.. [list output truncated]
$ bin :'data.frame': 2891 obs. of 25 variables:
..$ K.15mM : int [1:2891] 1 0 0 0 0 0 0 0 0 1 ...
..$ RIIIJ.1uM : int [1:2891] 0 0 0 0 0 0 0 0 0 1 ...
..$ K.15mM.1 : int [1:2891] 1 1 0 0 0 0 0 0 0 1 ...
..$ K.15mM.2 : int [1:2891] 1 0 0 0 0 0 0 0 0 0 ...
..$ K.15mM.3 : int [1:2891] 1 0 0 0 0 0 0 0 0 0 ...
..$ K.20mM : int [1:2891] 1 1 0 0 0 1 1 0 1 0 ...
..$ K.30mM : int [1:2891] 1 1 0 0 0 1 1 1 1 0 ...
..$ K.40mM : num [1:2891] 1 1 0 0 0 1 1 1 1 0 ...
..$ wash : int [1:2891] 0 0 1 0 0 0 0 0 0 0 ...
..$ TTA_A2.1uM : int [1:2891] 0 0 1 0 0 0 0 0 0 0 ...
..$ K.10mM_TTA_A2.1uM: int [1:2891] 0 0 1 0 0 0 0 0 0 0 ...
..$ TTA_A2.1uM.1 : int [1:2891] 0 0 1 0 0 0 0 0 0 0 ...
..$ K.20mM_TTA_A2.1uM: int [1:2891] 0 1 1 0 0 1 1 0 0 0 ...
..$ TTA_A2.1uM.2 : int [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ K.30mM_TTA_A2.1uM: int [1:2891] 1 1 1 0 0 1 1 1 1 0 ...
..$ TTA_A2.1uM.3 : int [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ K.40mM_TTA_A2.1uM: int [1:2891] 1 1 1 0 0 1 1 1 1 0 ...
..$ X10.washes : int [1:2891] 0 0 0 0 0 0 0 1 0 0 ...
..$ AITC.100uM : num [1:2891] 0 0 0 0 0 0 0 0 1 0 ...
..$ menthol.400uM : num [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ capsaicin.300nM : num [1:2891] 0 0 0 0 0 0 0 1 1 0 ...
..$ drop : num [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ epad : num [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ cy5.bin : num [1:2891] 1 1 NA NA NA 0 0 1 1 NA ...
..$ gfp.bin : num [1:2891] 0 0 NA NA NA 0 1 1 1 NA ...
$ scp :'data.frame': 2891 obs. of 119 variables:
..$ mean : num [1:2891] 0.0386 0.0949 0.3191 0.2424 0.3481 ...
..$ sd : num [1:2891] 0.0858 0.1636 0.1985 0.0907 0.1623 ...
..$ snr.iws : num [1:2891] 324.4 168.7 86.3 142.9 99.4 ...
..$ snr.ows : num [1:2891] 8.79 0 34.88 153.61 78.95 ...
..$ snr.iwc : int [1:2891] 11 7 12 33 18 10 9 5 6 31 ...
..$ snr.owc : int [1:2891] 1 0 6 35 11 5 0 1 0 33 ...
..$ bl.diff : num [1:2891] 0.0048 0.02348 0.01199 0.00311 0.00466 ...
..$ earl.bl.diff : num [1:2891] 0.00586 0.03011 0.009 0.00375 0.00586 ...
..$ late.bl.diff : num [1:2891] 0.00374 0.01684 0.01499 0.00248 0.00346 ...
..$ K.15mM.snr : num [1:2891] 10.68 0 3.29 0 3.12 ...
..$ K.15mM.tot : num [1:2891] 2.4 1.06 16.5 8.38 15.44 ...
..$ K.15mM.max : num [1:2891] 0.1062 0.0476 0.526 0.339 0.4987 ...
..$ K.15mM.ph.a.r : num [1:2891] 22.6 22.3 31.4 24.7 31 ...
..$ K.15mM.wm : int [1:2891] 13 27 38 35 27 14 14 30 16 18 ...
..$ RIIIJ.1uM.snr : num [1:2891] 0 0 2.61 5.47 5.1 ...
..$ RIIIJ.1uM.tot : num [1:2891] 1.443 0.883 34.854 30.743 63.297 ...
..$ RIIIJ.1uM.max : num [1:2891] 0.0249 0.0189 0.4184 0.4827 0.8156 ...
..$ RIIIJ.1uM.ph.a.r : num [1:2891] 58 46.8 83.3 63.7 77.6 ...
..$ RIIIJ.1uM.wm : int [1:2891] 1 1 20 97 64 4 1 10 1 102 ...
..$ K.15mM.1.snr : num [1:2891] 9.52 14.38 2.37 4.23 4.92 ...
..$ K.15mM.1.tot : num [1:2891] 2.06 6.55 7.41 10.28 26.1 ...
..$ K.15mM.1.max : num [1:2891] 0.0947 0.3636 0.3796 0.3735 0.7872 ...
..$ K.15mM.1.ph.a.r : num [1:2891] 21.7 18 19.5 27.5 33.1 ...
..$ K.15mM.1.wm : int [1:2891] 11 19 1 12 26 1 13 20 26 22 ...
..$ K.15mM.2.snr : num [1:2891] 13.11 0 2.29 5.87 0 ...
..$ K.15mM.2.tot : num [1:2891] 2.81 1.52 11.56 16.1 9.04 ...
..$ K.15mM.2.max : num [1:2891] 0.1304 0.0501 0.3657 0.5185 0.4132 ...
..$ K.15mM.2.ph.a.r : num [1:2891] 21.5 30.3 31.6 31.1 21.9 ...
..$ K.15mM.2.wm : int [1:2891] 11 15 6 9 45 14 13 27 17 1 ...
..$ K.15mM.3.snr : num [1:2891] 9.98 0 2.33 4.35 3.38 ...
..$ K.15mM.3.tot : num [1:2891] 2.097 0.643 10.087 10.61 14.913 ...
..$ K.15mM.3.max : num [1:2891] 0.0993 0.0157 0.3731 0.384 0.5405 ...
..$ K.15mM.3.ph.a.r : num [1:2891] 21.1 40.9 27 27.6 27.6 ...
..$ K.15mM.3.wm : int [1:2891] 11 15 11 9 44 43 30 29 18 39 ...
..$ K.20mM.snr : num [1:2891] 16.76 12.24 0 3.96 2.4 ...
..$ K.20mM.tot : num [1:2891] 3.48 6.28 8.92 10.08 8.47 ...
..$ K.20mM.max : num [1:2891] 0.167 0.31 0.294 0.35 0.384 ...
..$ K.20mM.ph.a.r : num [1:2891] 20.9 20.3 30.4 28.8 22 ...
..$ K.20mM.wm : int [1:2891] 12 15 45 11 23 13 13 15 15 42 ...
..$ K.30mM.snr : num [1:2891] 42.53 34.45 2.34 4.73 2.1 ...
..$ K.30mM.tot : num [1:2891] 7.78 24.09 10.64 12.82 9.01 ...
..$ K.30mM.max : num [1:2891] 0.423 0.871 0.375 0.418 0.336 ...
..$ K.30mM.ph.a.r : num [1:2891] 18.4 27.7 28.4 30.7 26.8 ...
..$ K.30mM.wm : int [1:2891] 14 12 29 16 42 11 12 13 13 38 ...
..$ K.40mM.snr : num [1:2891] 100.04 37.65 2.29 3.39 4.27 ...
..$ K.40mM.tot : num [1:2891] 21.07 27.61 12.06 7.51 23.41 ...
..$ K.40mM.max : num [1:2891] 0.995 0.952 0.366 0.299 0.683 ...
..$ K.40mM.ph.a.r : num [1:2891] 21.2 29 32.9 25.1 34.3 ...
..$ K.40mM.wm : int [1:2891] 12 11 30 31 30 11 11 11 11 39 ...
..$ wash.snr : num [1:2891] 0 0 0 5.18 2.43 ...
..$ wash.tot : num [1:2891] 0.684 1.38 21.124 11.941 8.425 ...
..$ wash.max : num [1:2891] 0.0189 0.0343 0.67 0.457 0.3882 ...
..$ wash.ph.a.r : num [1:2891] 36.2 40.2 31.5 26.1 21.7 ...
..$ wash.wm : int [1:2891] 23 9 43 28 35 1 40 1 1 45 ...
..$ TTA_A2.1uM.snr : num [1:2891] 0 0 5.53 4.47 2.08 ...
..$ TTA_A2.1uM.tot : num [1:2891] 1.11 2.39 92.68 31.72 19.43 ...
..$ TTA_A2.1uM.max : num [1:2891] 0.0159 0.0243 0.8852 0.3949 0.3328 ...
..$ TTA_A2.1uM.ph.a.r : num [1:2891] 69.6 98.4 104.7 80.3 58.4 ...
..$ TTA_A2.1uM.wm : int [1:2891] 1 1 58 93 43 44 2 1 1 103 ...
..$ K.10mM_TTA_A2.1uM.snr : num [1:2891] 0 0 0 3.3 3.33 ...
..$ K.10mM_TTA_A2.1uM.tot : num [1:2891] 0.366 0.85 29.063 8.2 12.853 ...
..$ K.10mM_TTA_A2.1uM.max : num [1:2891] 0.0115 0.0233 0.7704 0.352 0.5326 ...
..$ K.10mM_TTA_A2.1uM.ph.a.r: num [1:2891] 31.8 36.4 37.7 23.3 24.1 ...
..$ K.10mM_TTA_A2.1uM.wm : int [1:2891] 22 23 10 1 39 45 35 25 20 9 ...
..$ TTA_A2.1uM.1.snr : num [1:2891] 0 0 5.15 5.31 2.36 ...
..$ TTA_A2.1uM.1.tot : num [1:2891] 1.08 1.28 82.48 26.23 31.58 ...
..$ TTA_A2.1uM.1.max : num [1:2891] 0.0125 0.0137 0.8236 0.4689 0.4912 ...
..$ TTA_A2.1uM.1.ph.a.r : num [1:2891] 86.9 93.6 100.1 55.9 64.3 ...
..$ TTA_A2.1uM.1.wm : int [1:2891] 48 75 15 102 12 1 94 97 54 76 ...
..$ K.20mM_TTA_A2.1uM.snr : num [1:2891] 3.36 7.63 0 0 2.54 ...
..$ K.20mM_TTA_A2.1uM.tot : num [1:2891] 0.93 3.83 18.05 11.24 10.76 ...
..$ K.20mM_TTA_A2.1uM.max : num [1:2891] 0.0335 0.1928 0.5378 0.3536 0.4056 ...
..$ K.20mM_TTA_A2.1uM.ph.a.r: num [1:2891] 27.8 19.8 33.6 31.8 26.5 ...
..$ K.20mM_TTA_A2.1uM.wm : int [1:2891] 16 15 1 12 42 14 13 15 16 14 ...
..$ TTA_A2.1uM.2.snr : num [1:2891] 0 0 0 4.85 4.23 ...
..$ TTA_A2.1uM.2.tot : num [1:2891] 1.52 3.07 17.33 28.7 49.98 ...
..$ TTA_A2.1uM.2.max : num [1:2891] 0.0171 0.038 0.3359 0.4282 0.6772 ...
..$ TTA_A2.1uM.2.ph.a.r : num [1:2891] 89 80.9 51.6 67 73.8 ...
..$ TTA_A2.1uM.2.wm : int [1:2891] 50 1 1 50 102 115 108 1 1 60 ...
..$ K.30mM_TTA_A2.1uM.snr : num [1:2891] 23.82 28.21 2.95 4.45 3.75 ...
..$ K.30mM_TTA_A2.1uM.tot : num [1:2891] 4.35 17.83 12.79 10.46 17.18 ...
..$ K.30mM_TTA_A2.1uM.max : num [1:2891] 0.237 0.713 0.472 0.393 0.6 ...
..$ K.30mM_TTA_A2.1uM.ph.a.r: num [1:2891] 18.4 25 27.1 26.6 28.7 ...
..$ K.30mM_TTA_A2.1uM.wm : int [1:2891] 14 13 12 32 36 12 12 14 14 39 ...
..$ TTA_A2.1uM.3.snr : num [1:2891] 2.85 0 3.07 4.25 3.02 ...
..$ TTA_A2.1uM.3.tot : num [1:2891] 3.3 9.74 43.25 31.14 36.62 ...
..$ TTA_A2.1uM.3.max : num [1:2891] 0.0406 0.2185 0.4906 0.3747 0.4931 ...
..$ TTA_A2.1uM.3.ph.a.r : num [1:2891] 81.3 44.6 88.2 83.1 74.3 ...
..$ TTA_A2.1uM.3.wm : int [1:2891] 2 1 100 49 1 1 1 1 1 47 ...
..$ K.40mM_TTA_A2.1uM.snr : num [1:2891] 85.97 34.19 5.41 4.86 3.66 ...
..$ K.40mM_TTA_A2.1uM.tot : num [1:2891] 17.2 25.2 26.7 14 17.2 ...
..$ K.40mM_TTA_A2.1uM.max : num [1:2891] 0.855 0.864 0.866 0.429 0.585 ...
..$ K.40mM_TTA_A2.1uM.ph.a.r: num [1:2891] 20.1 29.1 30.8 32.6 29.4 ...
..$ K.40mM_TTA_A2.1uM.wm : int [1:2891] 12 11 11 33 27 11 11 11 12 10 ...
..$ X10.washes.snr : num [1:2891] 3.04 0 3.29 4.16 3.2 ...
..$ X10.washes.tot : num [1:2891] 2.66 6.78 28.43 24.84 35.49 ...
..$ X10.washes.max : num [1:2891] 0.0302 0.0895 0.527 0.4238 0.5118 ...
..$ X10.washes.ph.a.r : num [1:2891] 88.1 75.7 53.9 58.6 69.4 ...
..$ X10.washes.wm : int [1:2891] 27 1 45 8 51 1 1 1 1 97 ...
.. [list output truncated]
$ snr :'data.frame': 3184 obs. of 2892 variables:
..$ Time : num [1:3184] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.2 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.3 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.4 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.5 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.6 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.7 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.8 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.9 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.10 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.11 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.12 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.13 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.14 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.15 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.16 : num [1:3184] 0 0 0 0 0 ...
..$ X.17 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.18 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.19 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.20 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.21 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.22 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.23 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.24 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.25 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.26 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.27 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.28 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.29 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.30 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.31 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.32 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.33 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.34 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.35 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.36 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.37 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.38 : num [1:3184] 0 0 0 0 0 ...
..$ X.39 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.40 : num [1:3184] 0 0 0 0 0 ...
..$ X.41 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.42 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.43 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.44 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.45 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.46 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.47 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.48 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.49 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.50 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.51 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.52 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.53 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.54 : num [1:3184] 0 0 0 0 0 ...
..$ X.55 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.56 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.57 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.58 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.59 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.60 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.61 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.62 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.63 : num [1:3184] 0 0 0 0 0 ...
..$ X.64 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.65 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.66 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.67 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.68 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.69 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.70 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.71 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.72 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.73 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.74 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.75 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.76 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.77 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.78 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.79 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.80 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.81 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.82 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.83 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.84 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.85 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.86 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.87 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.88 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.89 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.90 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.91 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.92 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.93 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.94 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.95 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.96 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.97 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.98 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
.. [list output truncated]
$ blc :'data.frame': 3184 obs. of 2892 variables:
..$ Time : num [1:3184] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3184] 0 0 0 0.000531 0.00064 ...
..$ X.2 : num [1:3184] 0 0 0.000641 0.001477 0.00204 ...
..$ X.3 : num [1:3184] 0 0.349 0.442 0.451 0.476 ...
..$ X.4 : num [1:3184] 0 0 0 0.000916 0.003656 ...
..$ X.5 : num [1:3184] 0 0 0.0518 0.111 0.155 ...
..$ X.6 : num [1:3184] 0 0 0 0.000958 0 ...
..$ X.7 : num [1:3184] 0 0.0045 0.00575 0.00583 0.0059 ...
..$ X.8 : num [1:3184] 0 0.00438 0.0054 0.00538 0.00556 ...
..$ X.9 : num [1:3184] 0 0.000557 0.000873 0.000977 0.000947 ...
..$ X.10 : num [1:3184] 0 0.0295 0.0621 0.0909 0.1174 ...
..$ X.11 : num [1:3184] 0 0.00224 0.00362 0.00451 0.00508 ...
..$ X.12 : num [1:3184] 0 0.00678 0.00968 0.01105 0.01239 ...
..$ X.13 : num [1:3184] 0 0 0 0.000399 0.000418 ...
..$ X.14 : num [1:3184] 0 0 0 0.00082 0 ...
..$ X.15 : num [1:3184] 0.00 0.00 0.00 2.92e-05 0.00 ...
..$ X.16 : num [1:3184] 0 0.0143 0.0194 0.0214 0.0231 ...
..$ X.17 : num [1:3184] 0 0.00505 0.00672 0.00732 0.00794 ...
..$ X.18 : num [1:3184] 0 0 0 0.000294 0.000455 ...
..$ X.19 : num [1:3184] 0 0.019 0.0262 0.0294 0.0325 ...
..$ X.20 : num [1:3184] 0 0.00278 0.0036 0.00376 0.00404 ...
..$ X.21 : num [1:3184] 0 0.0729 0.078 0.0636 0.0537 ...
..$ X.22 : num [1:3184] 0 0.00202 0.00265 0.00275 0.00281 ...
..$ X.23 : num [1:3184] 0 0.00471 0.00611 0.00638 0.0067 ...
..$ X.24 : num [1:3184] 0 0.000272 0.000469 0.000661 0.000931 ...
..$ X.25 : num [1:3184] 0 0.00209 0.00279 0.00302 0.00331 ...
..$ X.26 : num [1:3184] 0.00 0.00 0.00 7.12e-05 0.00 ...
..$ X.27 : num [1:3184] 0.00 4.08e-05 7.17e-04 1.65e-03 2.68e-03 ...
..$ X.28 : num [1:3184] 0 0.00103 0.00126 0.00124 0.00133 ...
..$ X.29 : num [1:3184] 0 0.00745 0.00975 0.01033 0.01119 ...
..$ X.30 : num [1:3184] 0 0 0 0.0137 0.0223 ...
..$ X.31 : num [1:3184] 0 0 0 0.000188 0.000152 ...
..$ X.32 : num [1:3184] 0 0.0826 0.094 0.0858 0.0834 ...
..$ X.33 : num [1:3184] 0 0 0 0.00253 0 ...
..$ X.34 : num [1:3184] 0 0 0 0.00391 0.00487 ...
..$ X.35 : num [1:3184] 0 0 0 0.00542 0 ...
..$ X.36 : num [1:3184] 0 0 0 0.0118 0.0157 ...
..$ X.37 : num [1:3184] 0 0.288 0.364 0.375 0.404 ...
..$ X.38 : num [1:3184] 0 0.141 0.195 0.219 0.247 ...
..$ X.39 : num [1:3184] 0 0.00459 0.00611 0.0066 0.0071 ...
..$ X.40 : num [1:3184] 0 0.217 0.297 0.332 0.38 ...
..$ X.41 : num [1:3184] 0 0.0285 0.0568 0.0809 0.098 ...
..$ X.42 : num [1:3184] 0 0.000497 0.00044 0.000241 0.000148 ...
..$ X.43 : num [1:3184] 0 0 0 0.000981 0.001552 ...
..$ X.44 : num [1:3184] 0 0.00643 0.0076 0.00699 0.00651 ...
..$ X.45 : num [1:3184] 0 0 0 0.00617 0.00199 ...
..$ X.46 : num [1:3184] 0 0.00873 0.0116 0.01242 0.01322 ...
..$ X.47 : num [1:3184] 0 0 0 0.002843 0.000516 ...
..$ X.48 : num [1:3184] 0 0.00362 0.004 0.00359 0.00329 ...
..$ X.49 : num [1:3184] 0 0.035 0.0595 0.0777 0.0877 ...
..$ X.50 : num [1:3184] 0 0.0556 0.0901 0.116 0.1409 ...
..$ X.51 : num [1:3184] 0 0.00323 0.00421 0.00435 0.00444 ...
..$ X.52 : num [1:3184] 0 0 0.000241 0.000805 0.001143 ...
..$ X.53 : num [1:3184] 0 0 0 0.00238 0 ...
..$ X.54 : num [1:3184] 0 0.0551 0.0735 0.0793 0.0854 ...
..$ X.55 : num [1:3184] 0 0 0 0.001547 0.000534 ...
..$ X.56 : num [1:3184] 0 0.0349 0.0459 0.0489 0.0534 ...
..$ X.57 : num [1:3184] 0 0 0 0.00566 0 ...
..$ X.58 : num [1:3184] 0 0.041 0.0704 0.0943 0.1185 ...
..$ X.59 : num [1:3184] 0 0 0 0.00968 0.01002 ...
..$ X.60 : num [1:3184] 0 0.0304 0.0385 0.0397 0.0423 ...
..$ X.61 : num [1:3184] 0 0.0222 0.0294 0.0318 0.0345 ...
..$ X.62 : num [1:3184] 0 0.00589 0.00892 0.01079 0.01259 ...
..$ X.63 : num [1:3184] 0 0.11 0.146 0.158 0.172 ...
..$ X.64 : num [1:3184] 0 0 0 0.00343 0.0022 ...
..$ X.65 : num [1:3184] 0 0.0568 0.0763 0.0837 0.0943 ...
..$ X.66 : num [1:3184] 0 0 0 0 0 ...
..$ X.67 : num [1:3184] 0 0.00526 0.00685 0.0072 0.00773 ...
..$ X.68 : num [1:3184] 0.00 6.91e-05 7.08e-05 1.18e-04 1.08e-04 ...
..$ X.69 : num [1:3184] 0 0 0 0.0066 0 ...
..$ X.70 : num [1:3184] 0 0.208 0.267 0.28 0.306 ...
..$ X.71 : num [1:3184] 0 0.0018 0.00266 0.00308 0.00336 ...
..$ X.72 : num [1:3184] 0 0.0827 0.0876 0.0733 0.0724 ...
..$ X.73 : num [1:3184] 0 0.128 0.162 0.167 0.178 ...
..$ X.74 : num [1:3184] 0 0 0 0.00121 0.00142 ...
..$ X.75 : num [1:3184] 0 0.0036 0.00443 0.00433 0.00432 ...
..$ X.76 : num [1:3184] 0 0.0325 0.0411 0.0416 0.0433 ...
..$ X.77 : num [1:3184] 0 0 0 0.00165 0 ...
..$ X.78 : num [1:3184] 0 0.147 0.179 0.171 0.162 ...
..$ X.79 : num [1:3184] 0 0.000763 0.000782 0.000779 0.000531 ...
..$ X.80 : num [1:3184] 0 0 0 0.00166 0 ...
..$ X.81 : num [1:3184] 0 0.00501 0.00605 0.00564 0.00507 ...
..$ X.82 : num [1:3184] 0 0.00766 0.00975 0.01004 0.01043 ...
..$ X.83 : num [1:3184] 0 0.00154 0.00217 0.0024 0.00251 ...
..$ X.84 : num [1:3184] 0 0.0199 0.0339 0.0489 0.0618 ...
..$ X.85 : num [1:3184] 0 0 0 0.00242 0.00351 ...
..$ X.86 : num [1:3184] 0 0.00633 0.0125 0.01773 0.02189 ...
..$ X.87 : num [1:3184] 0 0.259 0.336 0.354 0.379 ...
..$ X.88 : num [1:3184] 0 0 0 0.00757 0 ...
..$ X.89 : num [1:3184] 0.00 0.00 0.00 6.68e-05 0.00 ...
..$ X.90 : num [1:3184] 0 0.0101 0.0125 0.0127 0.0133 ...
..$ X.91 : num [1:3184] 0.00 0.00 5.74e-05 2.94e-03 3.67e-03 ...
..$ X.92 : num [1:3184] 0 0 0 0.0207 0.0307 ...
..$ X.93 : num [1:3184] 0 0.0988 0.1163 0.1075 0.1026 ...
..$ X.94 : num [1:3184] 0 0 0.0191 0.0443 0.0653 ...
..$ X.95 : num [1:3184] 0 0.166 0.219 0.233 0.252 ...
..$ X.96 : num [1:3184] 0 0 0 0.00109 0.00163 ...
..$ X.97 : num [1:3184] 0 0.00345 0.00488 0.00551 0.00607 ...
..$ X.98 : num [1:3184] 0 0 0 0.00195 0 ...
.. [list output truncated]
$ img1 : num [1:2048, 1:2048, 1:3] 0.576 0.561 0.525 0.51 0.486 ...
$ img2 : num [1:2048, 1:2048, 1:3] 0.0353 0.0353 0.0314 0.0314 0.0314 ...
$ img3 : num [1:2048, 1:2048, 1:3] 0.0353 0.0353 0.0314 0.0314 0.0314 ...
$ img4 : num [1:2048, 1:2048, 1:3] 0 0 0 0 0 0 0 0 0 0 ...
$ img5 : num [1:2048, 1:2048, 1:3] 0 0 0 0 0 0 0 0 0 0 ...
$ img6 : num [1:2048, 1:2048, 1:4] 0 0 0 0 0 0 0 0 0 0 ...
$ img7 : num [1:2048, 1:2048, 1:3] 0.624 0.553 0.51 0.463 0.365 ...
$ img8 : num [1:2048, 1:2048, 1:3] 0 0 0 0 0 0 0 0 0 0 ...
$ grps : Named int [1:2891] 1 2 3 3 3 2 2 2 4 3 ...
..- attr(*, "names")= chr [1:2891] "X.1" "X.2" "X.3" "X.4" ...
$ cell.types:List of 19
..$ neurons : chr [1:1332] "X.1" "X.2" "X.6" "X.7" ...
..$ glia : chr [1:1415] "X.3" "X.4" "X.5" "X.10" ...
..$ L1 : chr [1:12] "X.193" "X.263" "X.268" "X.857" ...
..$ L2 : chr [1:11] "X.1210" "X.1330" "X.1343" "X.1692" ...
..$ L3 : chr [1:21] "X.71" "X.310" "X.464" "X.599" ...
..$ L4 : chr [1:24] "X.430" "X.458" "X.845" "X.1121" ...
..$ L5 : chr [1:9] "X.27" "X.206" "X.1037" "X.1451" ...
..$ L6 : chr [1:53] "X.7" "X.52" "X.119" "X.126" ...
..$ L5.split: chr "X.19"
..$ G7 : chr [1:22] "X.199" "X.289" "X.298" "X.387" ...
..$ G8 : chr [1:187] "X.8" "X.17" "X.28" "X.39" ...
..$ G9 : chr [1:104] "X.9" "X.18" "X.31" "X.34" ...
..$ G10 : chr [1:9] "X.847" "X.1180" "X.2863" "X.2694" ...
..$ R11 : chr [1:58] "X.150" "X.178" "X.187" "X.239" ...
..$ R12 : chr [1:23] "X.312" "X.528" "X.1045" "X.1072" ...
..$ R13 : chr [1:255] "X.68" "X.82" "X.83" "X.103" ...
..$ N14 : chr [1:130] "X.587" "X.968" "X.983" "X.987" ...
..$ N15 : chr [1:114] "X.15" "X.152" "X.205" "X.228" ...
..$ N16 : chr [1:33] "X.24" "X.67" "X.218" "X.258" ...
$ census :List of 17
..$ L1 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:12] "X.193" "X.263" "X.268" "X.857" ...
..$ L2 :List of 13
.. ..$ block: chr [1:11] "X.1210" "X.1330" "X.1343" "X.1692" ...
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
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.. ..$ NA : chr [1:11] "X.1210" "X.1330" "X.1343" "X.1692" ...
..$ L3 :List of 13
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.. ..$ NA : chr [1:21] "X.71" "X.310" "X.464" "X.599" ...
..$ L4 :List of 13
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.. ..$ NA : logi(0)
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.. ..$ NA : chr [1:24] "X.430" "X.458" "X.845" "X.1121" ...
..$ L5 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
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.. ..$ NA : chr [1:9] "X.27" "X.206" "X.1037" "X.1451" ...
..$ L6 :List of 13
.. ..$ block: logi(0)
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.. ..$ NA : chr [1:53] "X.7" "X.52" "X.119" "X.126" ...
..$ L5.split: logi NA
..$ G7 :List of 13
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.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
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.. ..$ NA : chr [1:22] "X.199" "X.289" "X.298" "X.387" ...
..$ G8 :List of 13
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.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
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..$ G9 :List of 13
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.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:104] "X.9" "X.18" "X.31" "X.34" ...
..$ G10 :List of 13
.. ..$ block: logi(0)
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.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:9] "X.847" "X.1180" "X.2863" "X.2694" ...
..$ R11 :List of 13
.. ..$ block: chr "X.522"
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:58] "X.150" "X.178" "X.187" "X.239" ...
..$ R12 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:23] "X.312" "X.528" "X.1045" "X.1072" ...
..$ R13 :List of 13
.. ..$ block: chr "X.2704"
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:255] "X.68" "X.82" "X.83" "X.103" ...
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.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
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.. ..$ NA : logi(0)
.. ..$ NA : chr [1:114] "X.15" "X.152" "X.205" "X.228" ...
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.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
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.. ..$ NA : chr [1:33] "X.24" "X.67" "X.218" "X.258" ...
leeleavitt/procPharm documentation built on Feb. 3, 2021, 11:43 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
RD file structure
The experiment are stored in an R list. If you have followed the instructions here follow the instruction here to view and understand each part of the experiment.
require(procpharm)
First change the working directory. Here i explicitly define the folder containing the experiment.
setwd("Y:/Lee Leavitt/Presentations/Paper/Figures/TTA A2 Dose Response/190531.39.m.m3.p2 ttaa2 potassium dose response comparison/")
Now that we are in the correct location load the experiment.
load("RD.190531.39.m.m3.p2.Rdata")
This function shows what has loaded into the workspace
ls()
'RD.190531.39.m.m3.p2'
This function define what type of object the experiment is,
class(RD.190531.39.m.m3.p2)
'list'
This function shows the names of all portions of the list
names(RD.190531.39.m.m3.p2)
- 't.dat'
- 't.340'
- 't.380'
- 'w.dat'
- 'c.dat'
- 'bin'
- 'scp'
- 'snr'
- 'blc'
- 'img1'
- 'img2'
- 'img3'
- 'img4'
- 'img5'
- 'img6'
- 'img7'
- 'img8'
- 'grps'
- 'cell.types'
- 'census'
RD experiment breakdown
- t.dat: data frame of the ratio of 340nM vs 380nM time series data for each cell
- t.340: data frame of the 340nM time series for each cell
- t.380: data frame of the 380nM time series for each cell
- w.dat: data frame defining the window region
- c.dat: data frame of all attributes defining the neuron based on the images
- bin: binary repsonse statistics for each cell for each window defined in w.dat
- scp: custom statistics for each window region for each cell,
- snr: signal to noise ratio
- tot: sum of all points within the window region
- max: maximum point within window region
- ph.a.r: peak-height/area
-
wm: where does the max occur within the window region
-
blc: baseline corrected trace
- img#: various image representations of the experiments.
- cell.types/cell_types: list of vectors of cell names.
Another way to understand what composes this experiment and to gain a better understanding is to use the lapply() function.
lapply(RD.190531.39.m.m3.p2, class)
lapply(RD.190531.39.m.m3.p2, dim)
- 3184
- 2892
- 3174
- 2892
- 3174
- 2892
- 3184
- 3
- 2891
- 257
- 2891
- 25
- 2891
- 119
- 3184
- 2892
- 3184
- 2892
- 2048
- 2048
- 3
- 2048
- 2048
- 3
- 2048
- 2048
- 3
- 2048
- 2048
- 3
- 2048
- 2048
- 3
- 2048
- 2048
- 4
- 2048
- 2048
- 3
- 2048
- 2048
- 3
Another way of dissecting the list to understand more is to use the str() function.
str(RD.190531.39.m.m3.p2)
List of 20
$ t.dat :'data.frame': 3184 obs. of 2892 variables:
..$ Time : num [1:3184] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3184] 0.525 0.521 0.519 0.525 0.521 ...
..$ X.2 : num [1:3184] 0.505 0.499 0.502 0.501 0.501 ...
..$ X.3 : num [1:3184] 0.635 0.639 0.64 0.655 0.658 ...
..$ X.4 : num [1:3184] 0.657 0.66 0.659 0.656 0.658 ...
..$ X.5 : num [1:3184] 0.576 0.565 0.556 0.559 0.571 ...
..$ X.6 : num [1:3184] 0.642 0.64 0.641 0.637 0.633 ...
..$ X.7 : num [1:3184] 0.482 0.48 0.481 0.482 0.484 ...
..$ X.8 : num [1:3184] 0.455 0.456 0.456 0.46 0.458 ...
..$ X.9 : num [1:3184] 0.466 0.462 0.468 0.466 0.464 ...
..$ X.10 : num [1:3184] 0.903 0.893 0.883 0.892 0.905 ...
..$ X.11 : num [1:3184] 0.482 0.476 0.477 0.481 0.48 ...
..$ X.12 : num [1:3184] 0.503 0.493 0.5 0.5 0.505 ...
..$ X.13 : num [1:3184] 0.518 0.515 0.512 0.515 0.515 ...
..$ X.14 : num [1:3184] 0.607 0.61 0.606 0.607 0.616 ...
..$ X.15 : num [1:3184] 0.457 0.457 0.457 0.457 0.46 ...
..$ X.16 : num [1:3184] 0.474 0.469 0.469 0.469 0.477 ...
..$ X.17 : num [1:3184] 0.475 0.473 0.474 0.471 0.476 ...
..$ X.18 : num [1:3184] 0.455 0.454 0.453 0.454 0.451 ...
..$ X.19 : num [1:3184] 0.609 0.6 0.604 0.603 0.609 ...
..$ X.20 : num [1:3184] 0.498 0.498 0.496 0.501 0.501 ...
..$ X.21 : num [1:3184] 0.508 0.509 0.514 0.512 0.512 ...
..$ X.22 : num [1:3184] 0.468 0.465 0.468 0.469 0.469 ...
..$ X.23 : num [1:3184] 0.467 0.463 0.468 0.469 0.47 ...
..$ X.24 : num [1:3184] 0.467 0.465 0.47 0.467 0.469 ...
..$ X.25 : num [1:3184] 0.438 0.438 0.436 0.44 0.437 ...
..$ X.26 : num [1:3184] 0.532 0.529 0.527 0.524 0.528 ...
..$ X.27 : num [1:3184] 0.624 0.623 0.625 0.622 0.627 ...
..$ X.28 : num [1:3184] 0.493 0.495 0.492 0.496 0.497 ...
..$ X.29 : num [1:3184] 0.466 0.463 0.468 0.466 0.47 ...
..$ X.30 : num [1:3184] 0.58 0.572 0.59 0.568 0.588 ...
..$ X.31 : num [1:3184] 0.552 0.552 0.553 0.554 0.556 ...
..$ X.32 : num [1:3184] 0.659 0.664 0.662 0.664 0.665 ...
..$ X.33 : num [1:3184] 0.597 0.592 0.595 0.596 0.591 ...
..$ X.34 : num [1:3184] 0.591 0.576 0.579 0.576 0.579 ...
..$ X.35 : num [1:3184] 0.571 0.571 0.571 0.568 0.562 ...
..$ X.36 : num [1:3184] 0.582 0.576 0.576 0.573 0.58 ...
..$ X.37 : num [1:3184] 0.647 0.653 0.658 0.652 0.666 ...
..$ X.38 : num [1:3184] 0.615 0.605 0.61 0.611 0.615 ...
..$ X.39 : num [1:3184] 0.514 0.512 0.51 0.515 0.514 ...
..$ X.40 : num [1:3184] 0.635 0.636 0.629 0.635 0.634 ...
..$ X.41 : num [1:3184] 0.677 0.669 0.666 0.677 0.673 ...
..$ X.42 : num [1:3184] 0.438 0.44 0.438 0.439 0.442 ...
..$ X.43 : num [1:3184] 0.575 0.568 0.574 0.573 0.569 ...
..$ X.44 : num [1:3184] 0.538 0.538 0.543 0.541 0.539 ...
..$ X.45 : num [1:3184] 0.581 0.572 0.58 0.579 0.583 ...
..$ X.46 : num [1:3184] 0.561 0.558 0.557 0.564 0.567 ...
..$ X.47 : num [1:3184] 0.532 0.531 0.525 0.541 0.537 ...
..$ X.48 : num [1:3184] 0.567 0.572 0.573 0.57 0.567 ...
..$ X.49 : num [1:3184] 0.64 0.633 0.633 0.644 0.637 ...
..$ X.50 : num [1:3184] 0.564 0.556 0.561 0.559 0.569 ...
..$ X.51 : num [1:3184] 0.474 0.47 0.477 0.475 0.473 ...
..$ X.52 : num [1:3184] 0.485 0.481 0.481 0.483 0.484 ...
..$ X.53 : num [1:3184] 0.634 0.637 0.619 0.634 0.63 ...
..$ X.54 : num [1:3184] 0.597 0.591 0.596 0.596 0.594 ...
..$ X.55 : num [1:3184] 0.573 0.573 0.568 0.575 0.573 ...
..$ X.56 : num [1:3184] 0.559 0.553 0.556 0.567 0.565 ...
..$ X.57 : num [1:3184] 0.595 0.586 0.596 0.592 0.586 ...
..$ X.58 : num [1:3184] 0.582 0.579 0.575 0.584 0.581 ...
..$ X.59 : num [1:3184] 0.563 0.555 0.564 0.56 0.562 ...
..$ X.60 : num [1:3184] 0.653 0.655 0.654 0.657 0.663 ...
..$ X.61 : num [1:3184] 0.582 0.578 0.58 0.586 0.584 ...
..$ X.62 : num [1:3184] 0.574 0.571 0.568 0.572 0.573 ...
..$ X.63 : num [1:3184] 0.559 0.556 0.558 0.557 0.56 ...
..$ X.64 : num [1:3184] 0.545 0.544 0.541 0.544 0.541 ...
..$ X.65 : num [1:3184] 0.552 0.55 0.555 0.546 0.553 ...
..$ X.66 : num [1:3184] 0.574 0.58 0.584 0.574 0.577 ...
..$ X.67 : num [1:3184] 0.453 0.451 0.452 0.454 0.454 ...
..$ X.68 : num [1:3184] 0.495 0.494 0.498 0.498 0.494 ...
..$ X.69 : num [1:3184] 0.538 0.531 0.531 0.538 0.532 ...
..$ X.70 : num [1:3184] 0.596 0.597 0.595 0.604 0.6 ...
..$ X.71 : num [1:3184] 0.504 0.5 0.503 0.501 0.504 ...
..$ X.72 : num [1:3184] 0.683 0.692 0.695 0.699 0.689 ...
..$ X.73 : num [1:3184] 0.607 0.611 0.607 0.608 0.637 ...
..$ X.74 : num [1:3184] 0.439 0.432 0.438 0.434 0.435 ...
..$ X.75 : num [1:3184] 0.529 0.529 0.529 0.529 0.531 ...
..$ X.76 : num [1:3184] 0.633 0.633 0.629 0.634 0.638 ...
..$ X.77 : num [1:3184] 0.624 0.618 0.619 0.619 0.615 ...
..$ X.78 : num [1:3184] 0.587 0.587 0.586 0.594 0.589 ...
..$ X.79 : num [1:3184] 0.535 0.534 0.541 0.541 0.533 ...
..$ X.80 : num [1:3184] 0.597 0.618 0.611 0.608 0.6 ...
..$ X.81 : num [1:3184] 0.663 0.664 0.661 0.666 0.665 ...
..$ X.82 : num [1:3184] 0.493 0.492 0.494 0.497 0.494 ...
..$ X.83 : num [1:3184] 0.481 0.478 0.479 0.481 0.478 ...
..$ X.84 : num [1:3184] 0.824 0.82 0.832 0.812 0.829 ...
..$ X.85 : num [1:3184] 0.592 0.581 0.583 0.582 0.584 ...
..$ X.86 : num [1:3184] 0.686 0.682 0.684 0.688 0.685 ...
..$ X.87 : num [1:3184] 0.567 0.564 0.568 0.574 0.569 ...
..$ X.88 : num [1:3184] 0.579 0.58 0.579 0.578 0.573 ...
..$ X.89 : num [1:3184] 0.512 0.514 0.513 0.516 0.512 ...
..$ X.90 : num [1:3184] 0.53 0.531 0.536 0.535 0.535 ...
..$ X.91 : num [1:3184] 0.605 0.594 0.591 0.597 0.605 ...
..$ X.92 : num [1:3184] 0.658 0.642 0.635 0.636 0.642 ...
..$ X.93 : num [1:3184] 0.653 0.652 0.66 0.663 0.656 ...
..$ X.94 : num [1:3184] 0.647 0.635 0.635 0.63 0.641 ...
..$ X.95 : num [1:3184] 0.608 0.603 0.608 0.61 0.62 ...
..$ X.96 : num [1:3184] 0.576 0.574 0.572 0.575 0.574 ...
..$ X.97 : num [1:3184] 0.465 0.463 0.462 0.464 0.467 ...
..$ X.98 : num [1:3184] 0.557 0.56 0.557 0.556 0.557 ...
.. [list output truncated]
$ t.340 :'data.frame': 3174 obs. of 2892 variables:
..$ Time : num [1:3174] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3174] 203 202 202 203 202 ...
..$ X.2 : num [1:3174] 213 211 213 212 212 ...
..$ X.3 : num [1:3174] 140 142 142 144 144 ...
..$ X.4 : num [1:3174] 141 142 142 141 140 ...
..$ X.5 : num [1:3174] 158 156 155 155 158 ...
..$ X.6 : num [1:3174] 148 148 147 147 146 ...
..$ X.7 : num [1:3174] 201 201 201 201 202 ...
..$ X.8 : num [1:3174] 225 226 226 227 226 ...
..$ X.9 : num [1:3174] 203 202 204 204 203 ...
..$ X.10 : num [1:3174] 114 114 114 115 114 ...
..$ X.11 : num [1:3174] 236 235 235 236 236 ...
..$ X.12 : num [1:3174] 171 170 172 170 172 ...
..$ X.13 : num [1:3174] 180 180 180 180 180 ...
..$ X.14 : num [1:3174] 146 147 147 147 147 ...
..$ X.15 : num [1:3174] 300 299 299 299 300 ...
..$ X.16 : num [1:3174] 187 187 186 188 188 ...
..$ X.17 : num [1:3174] 231 230 230 229 230 ...
..$ X.18 : num [1:3174] 234 234 233 234 233 ...
..$ X.19 : num [1:3174] 148 147 147 147 149 ...
..$ X.20 : num [1:3174] 216 216 215 217 217 ...
..$ X.21 : num [1:3174] 186 187 186 188 187 ...
..$ X.22 : num [1:3174] 217 218 218 219 218 ...
..$ X.23 : num [1:3174] 219 220 219 221 221 ...
..$ X.24 : num [1:3174] 204 204 205 204 205 ...
..$ X.25 : num [1:3174] 216 217 216 217 216 ...
..$ X.26 : num [1:3174] 226 225 224 224 224 ...
..$ X.27 : num [1:3174] 131 132 131 131 132 ...
..$ X.28 : num [1:3174] 175 174 173 174 174 ...
..$ X.29 : num [1:3174] 212 211 212 212 213 ...
..$ X.30 : num [1:3174] 154 155 155 153 155 ...
..$ X.31 : num [1:3174] 200 201 201 202 200 ...
..$ X.32 : num [1:3174] 141 141 140 140 140 ...
..$ X.33 : num [1:3174] 164 164 164 164 163 ...
..$ X.34 : num [1:3174] 209 208 208 207 208 ...
..$ X.35 : num [1:3174] 152 152 152 151 150 ...
..$ X.36 : num [1:3174] 161 159 158 159 160 ...
..$ X.37 : num [1:3174] 141 140 141 141 143 ...
..$ X.38 : num [1:3174] 148 146 146 147 146 ...
..$ X.39 : num [1:3174] 205 206 204 206 206 ...
..$ X.40 : num [1:3174] 144 144 143 144 144 ...
..$ X.41 : num [1:3174] 133 133 132 135 133 ...
..$ X.42 : num [1:3174] 233 235 233 235 235 ...
..$ X.43 : num [1:3174] 157 155 156 156 156 ...
..$ X.44 : num [1:3174] 199 199 199 199 199 ...
..$ X.45 : num [1:3174] 153 152 155 153 154 ...
..$ X.46 : num [1:3174] 170 170 169 171 172 ...
..$ X.47 : num [1:3174] 168 169 168 172 170 ...
..$ X.48 : num [1:3174] 223 223 224 223 222 ...
..$ X.49 : num [1:3174] 157 157 157 158 157 ...
..$ X.50 : num [1:3174] 184 184 184 185 186 ...
..$ X.51 : num [1:3174] 193 194 195 194 195 ...
..$ X.52 : num [1:3174] 243 242 242 243 243 ...
..$ X.53 : num [1:3174] 136 135 133 135 134 ...
..$ X.54 : num [1:3174] 152 154 154 154 153 ...
..$ X.55 : num [1:3174] 174 175 173 174 173 ...
..$ X.56 : num [1:3174] 139 137 138 138 139 ...
..$ X.57 : num [1:3174] 158 156 158 157 156 ...
..$ X.58 : num [1:3174] 152 152 152 152 152 ...
..$ X.59 : num [1:3174] 166 164 166 165 166 ...
..$ X.60 : num [1:3174] 128 128 128 128 128 ...
..$ X.61 : num [1:3174] 162 162 163 164 163 ...
..$ X.62 : num [1:3174] 174 174 175 175 174 ...
..$ X.63 : num [1:3174] 174 175 175 175 176 ...
..$ X.64 : num [1:3174] 233 232 233 234 231 ...
..$ X.65 : num [1:3174] 153 153 155 152 155 ...
..$ X.66 : num [1:3174] 132 133 133 133 133 ...
..$ X.67 : num [1:3174] 228 230 228 229 229 ...
..$ X.68 : num [1:3174] 213 213 214 214 213 ...
..$ X.69 : num [1:3174] 141 140 140 141 141 ...
..$ X.70 : num [1:3174] 160 160 160 162 160 ...
..$ X.71 : num [1:3174] 262 262 262 262 262 ...
..$ X.72 : num [1:3174] 131 132 131 132 130 ...
..$ X.73 : num [1:3174] 136 137 136 137 140 ...
..$ X.74 : num [1:3174] 242 240 244 241 240 ...
..$ X.75 : num [1:3174] 218 219 219 219 220 ...
..$ X.76 : num [1:3174] 233 232 234 234 234 ...
..$ X.77 : num [1:3174] 128 129 128 131 128 ...
..$ X.78 : num [1:3174] 152 152 152 153 153 ...
..$ X.79 : num [1:3174] 217 218 219 220 217 ...
..$ X.80 : num [1:3174] 133 136 135 134 132 ...
..$ X.81 : num [1:3174] 147 147 146 147 147 ...
..$ X.82 : num [1:3174] 203 202 203 203 202 ...
..$ X.83 : num [1:3174] 229 228 229 229 228 ...
..$ X.84 : num [1:3174] 106 105 105 104 106 ...
..$ X.85 : num [1:3174] 157 156 156 156 156 ...
..$ X.86 : num [1:3174] 147 147 146 147 146 ...
..$ X.87 : num [1:3174] 151 152 153 152 151 ...
..$ X.88 : num [1:3174] 168 168 168 168 166 ...
..$ X.89 : num [1:3174] 203 203 202 203 203 ...
..$ X.90 : num [1:3174] 176 177 177 178 177 ...
..$ X.91 : num [1:3174] 134 132 133 133 135 ...
..$ X.92 : num [1:3174] 165 163 164 161 163 ...
..$ X.93 : num [1:3174] 139 138 141 140 140 ...
..$ X.94 : num [1:3174] 133 132 132 131 132 ...
..$ X.95 : num [1:3174] 151 151 151 152 154 ...
..$ X.96 : num [1:3174] 158 156 154 157 156 ...
..$ X.97 : num [1:3174] 225 225 224 225 226 ...
..$ X.98 : num [1:3174] 171 173 172 171 173 ...
.. [list output truncated]
$ t.380 :'data.frame': 3174 obs. of 2892 variables:
..$ Time : num [1:3174] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3174] 387 388 388 387 388 ...
..$ X.2 : num [1:3174] 421 424 424 424 422 ...
..$ X.3 : num [1:3174] 220 222 221 219 219 ...
..$ X.4 : num [1:3174] 214 215 215 214 212 ...
..$ X.5 : num [1:3174] 274 276 279 277 276 ...
..$ X.6 : num [1:3174] 231 231 229 231 231 ...
..$ X.7 : num [1:3174] 417 419 418 416 417 ...
..$ X.8 : num [1:3174] 493 495 494 494 492 ...
..$ X.9 : num [1:3174] 435 438 437 437 437 ...
..$ X.10 : num [1:3174] 126 127 129 129 126 ...
..$ X.11 : num [1:3174] 490 495 493 491 491 ...
..$ X.12 : num [1:3174] 339 345 343 341 340 ...
..$ X.13 : num [1:3174] 348 349 351 349 349 ...
..$ X.14 : num [1:3174] 241 241 243 243 239 ...
..$ X.15 : num [1:3174] 655 654 653 655 652 ...
..$ X.16 : num [1:3174] 395 399 397 401 395 ...
..$ X.17 : num [1:3174] 486 487 485 486 484 ...
..$ X.18 : num [1:3174] 514 514 515 515 516 ...
..$ X.19 : num [1:3174] 243 245 243 244 244 ...
..$ X.20 : num [1:3174] 433 433 434 432 434 ...
..$ X.21 : num [1:3174] 365 367 363 366 366 ...
..$ X.22 : num [1:3174] 465 468 465 467 465 ...
..$ X.23 : num [1:3174] 470 475 469 471 470 ...
..$ X.24 : num [1:3174] 438 439 437 438 437 ...
..$ X.25 : num [1:3174] 493 495 495 493 494 ...
..$ X.26 : num [1:3174] 424 425 426 427 425 ...
..$ X.27 : num [1:3174] 210 212 210 211 210 ...
..$ X.28 : num [1:3174] 354 352 352 352 351 ...
..$ X.29 : num [1:3174] 454 456 454 455 453 ...
..$ X.30 : num [1:3174] 265 271 262 270 263 ...
..$ X.31 : num [1:3174] 363 365 363 364 361 ...
..$ X.32 : num [1:3174] 214 213 212 211 211 ...
..$ X.33 : num [1:3174] 276 276 275 276 276 ...
..$ X.34 : num [1:3174] 354 360 359 360 360 ...
..$ X.35 : num [1:3174] 266 267 265 266 267 ...
..$ X.36 : num [1:3174] 276 276 275 277 275 ...
..$ X.37 : num [1:3174] 218 215 215 217 214 ...
..$ X.38 : num [1:3174] 241 241 240 240 238 ...
..$ X.39 : num [1:3174] 400 403 400 400 400 ...
..$ X.40 : num [1:3174] 227 226 228 227 228 ...
..$ X.41 : num [1:3174] 197 199 199 200 198 ...
..$ X.42 : num [1:3174] 533 533 534 535 531 ...
..$ X.43 : num [1:3174] 272 273 271 272 274 ...
..$ X.44 : num [1:3174] 369 370 367 367 369 ...
..$ X.45 : num [1:3174] 264 266 267 265 265 ...
..$ X.46 : num [1:3174] 304 304 304 303 304 ...
..$ X.47 : num [1:3174] 315 318 320 318 317 ...
..$ X.48 : num [1:3174] 393 390 390 391 391 ...
..$ X.49 : num [1:3174] 245 248 248 246 247 ...
..$ X.50 : num [1:3174] 326 330 328 331 327 ...
..$ X.51 : num [1:3174] 408 413 408 408 411 ...
..$ X.52 : num [1:3174] 500 503 503 503 502 ...
..$ X.53 : num [1:3174] 215 212 215 214 212 ...
..$ X.54 : num [1:3174] 255 260 258 258 258 ...
..$ X.55 : num [1:3174] 303 305 305 303 302 ...
..$ X.56 : num [1:3174] 248 247 248 244 245 ...
..$ X.57 : num [1:3174] 265 266 264 266 266 ...
..$ X.58 : num [1:3174] 262 263 264 260 261 ...
..$ X.59 : num [1:3174] 294 296 295 295 295 ...
..$ X.60 : num [1:3174] 196 195 195 194 193 ...
..$ X.61 : num [1:3174] 279 281 281 279 279 ...
..$ X.62 : num [1:3174] 304 305 307 306 304 ...
..$ X.63 : num [1:3174] 312 314 313 314 314 ...
..$ X.64 : num [1:3174] 427 427 430 430 428 ...
..$ X.65 : num [1:3174] 278 277 279 278 279 ...
..$ X.66 : num [1:3174] 231 228 228 231 231 ...
..$ X.67 : num [1:3174] 504 509 505 505 505 ...
..$ X.68 : num [1:3174] 430 431 429 430 431 ...
..$ X.69 : num [1:3174] 262 264 263 262 265 ...
..$ X.70 : num [1:3174] 268 269 268 268 267 ...
..$ X.71 : num [1:3174] 520 523 521 523 520 ...
..$ X.72 : num [1:3174] 192 190 189 189 189 ...
..$ X.73 : num [1:3174] 224 224 225 225 220 ...
..$ X.74 : num [1:3174] 552 557 557 556 553 ...
..$ X.75 : num [1:3174] 413 414 414 414 413 ...
..$ X.76 : num [1:3174] 368 367 372 369 366 ...
..$ X.77 : num [1:3174] 205 209 207 211 208 ...
..$ X.78 : num [1:3174] 259 260 259 258 259 ...
..$ X.79 : num [1:3174] 405 408 405 406 407 ...
..$ X.80 : num [1:3174] 222 220 220 221 221 ...
..$ X.81 : num [1:3174] 221 221 220 220 221 ...
..$ X.82 : num [1:3174] 411 412 411 409 409 ...
..$ X.83 : num [1:3174] 475 476 478 476 476 ...
..$ X.84 : num [1:3174] 129 129 126 128 127 ...
..$ X.85 : num [1:3174] 265 268 267 267 266 ...
..$ X.86 : num [1:3174] 214 215 213 213 214 ...
..$ X.87 : num [1:3174] 267 269 270 265 266 ...
..$ X.88 : num [1:3174] 291 290 290 291 290 ...
..$ X.89 : num [1:3174] 396 395 394 394 396 ...
..$ X.90 : num [1:3174] 331 333 330 332 331 ...
..$ X.91 : num [1:3174] 222 222 224 222 223 ...
..$ X.92 : num [1:3174] 250 253 258 253 254 ...
..$ X.93 : num [1:3174] 214 212 213 211 213 ...
..$ X.94 : num [1:3174] 205 208 208 208 206 ...
..$ X.95 : num [1:3174] 248 250 248 248 247 ...
..$ X.96 : num [1:3174] 274 271 270 274 271 ...
..$ X.97 : num [1:3174] 484 487 485 485 485 ...
..$ X.98 : num [1:3174] 307 309 309 309 310 ...
.. [list output truncated]
$ w.dat :'data.frame': 3184 obs. of 3 variables:
..$ Time : num [1:3184] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ wr1 : chr [1:3184] "" "" "" "" ...
..$ ignore: num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
$ c.dat :'data.frame': 2891 obs. of 257 variables:
..$ id : chr [1:2891] "X.1" "X.2" "X.3" "X.4" ...
..$ area : num [1:2891] 263.2 339.6 42.2 89.4 65 ...
..$ center.x.simplified : num [1:2891] 464 976 597 251 819 ...
..$ center.y.simplified : num [1:2891] 12 12 13 16 14 15 16 17 21 21 ...
..$ circularity : num [1:2891] 0.96 0.952 0.792 0.62 1.025 ...
..$ perimeter : num [1:2891] 46 52.5 20.3 33.4 22.1 ...
..$ mean.bf.end : num [1:2891] 0.0231 0.0262 0.0188 0.0223 0.0274 ...
..$ mean.bf.start : num [1:2891] 0.0214 0.0247 0.0236 0.0233 0.0257 ...
..$ mean.gfp.end : num [1:2891] 0.00156 0.00157 0.00159 0.00155 0.00158 ...
..$ mean.gfp.start : num [1:2891] 0.00157 0.00157 0.00156 0.00155 0.00156 ...
..$ mean.dapi : num [1:2891] 0.00506 0.00468 0.00332 0.00394 0.00386 ...
..$ mean.cy5.end : num [1:2891] 0.00409 0.00604 0.00301 0.00264 0.00286 ...
..$ center.x : num [1:2891] 464 975 597 251 818 ...
..$ center.y : num [1:2891] 11.7 11.9 12.9 14 14.2 ...
..$ ImageNumber : int [1:2891] 2 2 2 2 2 2 2 2 2 2 ...
..$ ObjectNumber : int [1:2891] 1 2 3 4 5 6 7 8 9 10 ...
..$ AreaShape_Area : int [1:2891] 162 209 26 55 40 44 500 185 132 29 ...
..$ AreaShape_Center_X : num [1:2891] 464 976 597 251 819 ...
..$ AreaShape_Center_Y : num [1:2891] 12 12 13 16 14 15 16 17 21 21 ...
..$ AreaShape_Compactness : num [1:2891] 1 1 1.1 1.28 1.02 ...
..$ AreaShape_Eccentricity : num [1:2891] 0.287 0.374 0.774 0.838 0.626 ...
..$ AreaShape_EulerNumber : num [1:2891] 1 1 1 1 1 1 1 1 1 1 ...
..$ AreaShape_Extent : num [1:2891] 0.827 0.768 0.743 0.655 0.833 ...
..$ AreaShape_FormFactor : num [1:2891] 0.96 0.952 0.792 0.62 1.025 ...
..$ AreaShape_MajorAxisLength : num [1:2891] 14.73 17 7.31 11.85 8.13 ...
..$ AreaShape_MaxFeretDiameter : num [1:2891] 14.42 16.76 6.32 11.4 7.28 ...
..$ AreaShape_MaximumRadius : num [1:2891] 6.71 7.62 2.24 3.16 3 ...
..$ AreaShape_MeanRadius : num [1:2891] 2.76 3.05 1.34 1.54 1.61 ...
..$ AreaShape_MedianRadius : num [1:2891] 2.24 2.83 1 1.41 1.41 ...
..$ AreaShape_MinFeretDiameter : num [1:2891] 13 14.8 4 6 5 ...
..$ AreaShape_MinorAxisLength : num [1:2891] 14.11 15.76 4.63 6.46 6.34 ...
..$ AreaShape_Orientation : num [1:2891] -54 74.6 85.5 72.6 90 ...
..$ AreaShape_Perimeter : num [1:2891] 46 52.5 20.3 33.4 22.1 ...
..$ AreaShape_Solidity : num [1:2891] 0.945 0.939 0.881 0.88 0.93 ...
..$ AreaShape_Zernike_0_0 : num [1:2891] 0.991 0.947 0.828 0.539 0.895 ...
..$ AreaShape_Zernike_1_1 : num [1:2891] 0.03623 0.0132 0.09549 0.05161 0.00274 ...
..$ AreaShape_Zernike_2_0 : num [1:2891] 0.00667 0.04733 0.05093 0.15686 0.0785 ...
..$ AreaShape_Zernike_2_2 : num [1:2891] 0.0199 0.0342 0.154 0.1066 0.0824 ...
..$ AreaShape_Zernike_3_1 : num [1:2891] 0.0328 0.0117 0.0308 0.0178 0.0106 ...
..$ AreaShape_Zernike_3_3 : num [1:2891] 0.0179 0.0117 0.0573 0.017 0.0392 ...
..$ AreaShape_Zernike_4_0 : num [1:2891] 0.00181 0.03702 0.0713 0.02299 0.03078 ...
..$ AreaShape_Zernike_4_2 : num [1:2891] 0.0201 0.0304 0.0936 0.0245 0.0615 ...
..$ AreaShape_Zernike_4_4 : num [1:2891] 0.0133 0.0202 0.0509 0.0448 0.0134 ...
..$ AreaShape_Zernike_5_1 : num [1:2891] 0.027 0.00943 0.03522 0.00602 0.0265 ...
..$ AreaShape_Zernike_5_3 : num [1:2891] 0.01642 0.00946 0.03696 0.03457 0.04162 ...
..$ AreaShape_Zernike_5_5 : num [1:2891] 0.01019 0.00942 0.00201 0.01054 0.02942 ...
..$ AreaShape_Zernike_6_0 : num [1:2891] 0.00437 0.02396 0.11714 0.02337 0.02324 ...
..$ AreaShape_Zernike_6_2 : num [1:2891] 0.02062 0.02515 0.08246 0.00957 0.03914 ...
..$ AreaShape_Zernike_6_4 : num [1:2891] 0.0113 0.0146 0.0528 0.0118 0.045 ...
..$ AreaShape_Zernike_6_6 : num [1:2891] 0.0116 0.0019 0.0303 0.0272 0.0556 ...
..$ AreaShape_Zernike_7_1 : num [1:2891] 0.0189 0.0067 0.0308 0.01 0.0518 ...
..$ AreaShape_Zernike_7_3 : num [1:2891] 0.01371 0.00679 0.01947 0.02186 0.04755 ...
..$ AreaShape_Zernike_7_5 : num [1:2891] 0.00473 0.00683 0.06125 0.01087 0.0387 ...
..$ AreaShape_Zernike_7_7 : num [1:2891] 0.00943 0.00665 0.02228 0.00703 0.01108 ...
..$ AreaShape_Zernike_8_0 : num [1:2891] 0.0105 0.0105 0.1061 0.0208 0.0591 ...
..$ AreaShape_Zernike_8_2 : num [1:2891] 0.0215 0.0186 0.0801 0.0232 0.0251 ...
..$ AreaShape_Zernike_8_4 : num [1:2891] 0.0106 0.0108 0.0712 0.0119 0.061 ...
..$ AreaShape_Zernike_8_6 : num [1:2891] 0.00982 0.00514 0.02986 0.02065 0.02814 ...
..$ AreaShape_Zernike_8_8 : num [1:2891] 0.00326 0.00427 0.02577 0.02041 0.04746 ...
..$ AreaShape_Zernike_9_1 : num [1:2891] 0.0089 0.00388 0.03216 0.0014 0.08 ...
..$ AreaShape_Zernike_9_3 : num [1:2891] 0.00959 0.00408 0.01898 0.0058 0.05386 ...
..$ AreaShape_Zernike_9_5 : num [1:2891] 0.00341 0.00428 0.03611 0.00843 0.04807 ...
..$ AreaShape_Zernike_9_7 : num [1:2891] 0.00334 0.00421 0.02949 0.00687 0.03151 ...
..$ AreaShape_Zernike_9_9 : num [1:2891] 0.00203 0.00371 0.03838 0.00536 0.00593 ...
..$ Intensity_IntegratedIntensityEdge_BF_end : num [1:2891] 1.163 1.634 0.384 0.804 0.648 ...
..$ Intensity_IntegratedIntensityEdge_BF_start : num [1:2891] 0.898 1.43 0.442 0.807 0.628 ...
..$ Intensity_IntegratedIntensityEdge_CGRP_end_ci : num [1:2891] 0.0811 0.0964 0.0304 0.0543 0.0379 ...
..$ Intensity_IntegratedIntensityEdge_CGRP_start_ci : num [1:2891] 0.0814 0.0968 0.0297 0.0543 0.0374 ...
..$ Intensity_IntegratedIntensityEdge_DAPI_ci : num [1:2891] 0.1483 0.167 0.0618 0.12 0.0837 ...
..$ Intensity_IntegratedIntensityEdge_IB4_end_ci : num [1:2891] 0.2054 0.3449 0.0569 0.0924 0.0688 ...
..$ Intensity_IntegratedIntensityEdge_f2_340_end_ci : num [1:2891] 0.1494 0.1938 0.0567 0.0982 0.071 ...
..$ Intensity_IntegratedIntensityEdge_f2_340_start_ci: num [1:2891] 0.1429 0.1723 0.0498 0.0855 0.0625 ...
..$ Intensity_IntegratedIntensityEdge_f2_380_end_ci : num [1:2891] 0.2416 0.2585 0.0864 0.1655 0.1239 ...
..$ Intensity_IntegratedIntensityEdge_f2_380_start_ci: num [1:2891] 0.2447 0.2927 0.0884 0.1444 0.1126 ...
..$ Intensity_IntegratedIntensity_BF_end : num [1:2891] 3.741 5.466 0.489 1.227 1.095 ...
..$ Intensity_IntegratedIntensity_BF_start : num [1:2891] 3.468 5.172 0.613 1.282 1.027 ...
..$ Intensity_IntegratedIntensity_CGRP_end_ci : num [1:2891] 0.2535 0.3271 0.0415 0.0853 0.0631 ...
..$ Intensity_IntegratedIntensity_CGRP_start_ci : num [1:2891] 0.255 0.3274 0.0407 0.0853 0.0624 ...
..$ Intensity_IntegratedIntensity_DAPI_ci : num [1:2891] 0.8193 0.9775 0.0864 0.2169 0.1543 ...
..$ Intensity_IntegratedIntensity_IB4_end_ci : num [1:2891] 0.6627 1.262 0.0781 0.1451 0.1143 ...
..$ Intensity_IntegratedIntensity_f2_340_end_ci : num [1:2891] 0.6991 0.9908 0.0799 0.1661 0.1265 ...
..$ Intensity_IntegratedIntensity_f2_340_start_ci : num [1:2891] 0.7176 0.9892 0.0749 0.1469 0.1242 ...
..$ Intensity_IntegratedIntensity_f2_380_end_ci : num [1:2891] 1.412 1.606 0.123 0.294 0.233 ...
..$ Intensity_IntegratedIntensity_f2_380_start_ci : num [1:2891] 1.551 2.181 0.141 0.266 0.255 ...
..$ Intensity_LowerQuartileIntensity_BF_end : num [1:2891] 0.0185 0.0205 0.014 0.0178 0.0212 ...
..$ Intensity_LowerQuartileIntensity_BF_start : num [1:2891] 0.0162 0.0188 0.022 0.0197 0.0225 ...
..$ Intensity_LowerQuartileIntensity_CGRP_end_ci : num [1:2891] 0.00155 0.00155 0.00156 0.00154 0.00156 ...
..$ Intensity_LowerQuartileIntensity_CGRP_start_ci : num [1:2891] 0.00156 0.00155 0.00155 0.00154 0.00155 ...
..$ Intensity_LowerQuartileIntensity_DAPI_ci : num [1:2891] 0.00322 0.00295 0.00291 0.00295 0.00262 ...
..$ Intensity_LowerQuartileIntensity_IB4_end_ci : num [1:2891] 0.00372 0.00443 0.00292 0.00259 0.00281 ...
..$ Intensity_LowerQuartileIntensity_f2_340_end_ci : num [1:2891] 0.00324 0.00337 0.00267 0.00272 0.00252 ...
..$ Intensity_LowerQuartileIntensity_f2_340_start_ci : num [1:2891] 0.00315 0.0034 0.00251 0.0024 0.00247 ...
..$ Intensity_LowerQuartileIntensity_f2_380_end_ci : num [1:2891] 0.0054 0.00471 0.00356 0.00454 0.00381 ...
..$ Intensity_LowerQuartileIntensity_f2_380_start_ci : num [1:2891] 0.00578 0.0064 0.00429 0.00394 0.00417 ...
..$ Intensity_MADIntensity_BF_end : num [1:2891] 0.00432 0.0055 0.0041 0.0046 0.00627 ...
..$ Intensity_MADIntensity_BF_start : num [1:2891] 0.00526 0.00524 0.00201 0.00501 0.00354 ...
..$ Intensity_MADIntensity_CGRP_end_ci : num [1:2891] 1.51e-05 1.50e-05 1.52e-05 1.53e-05 1.53e-05 ...
..$ Intensity_MADIntensity_CGRP_start_ci : num [1:2891] 1.49e-05 1.50e-05 1.51e-05 1.53e-05 1.50e-05 ...
..$ Intensity_MADIntensity_DAPI_ci : num [1:2891] 0.001611 0.00161 0.000448 0.000763 0.000882 ...
.. [list output truncated]
$ bin :'data.frame': 2891 obs. of 25 variables:
..$ K.15mM : int [1:2891] 1 0 0 0 0 0 0 0 0 1 ...
..$ RIIIJ.1uM : int [1:2891] 0 0 0 0 0 0 0 0 0 1 ...
..$ K.15mM.1 : int [1:2891] 1 1 0 0 0 0 0 0 0 1 ...
..$ K.15mM.2 : int [1:2891] 1 0 0 0 0 0 0 0 0 0 ...
..$ K.15mM.3 : int [1:2891] 1 0 0 0 0 0 0 0 0 0 ...
..$ K.20mM : int [1:2891] 1 1 0 0 0 1 1 0 1 0 ...
..$ K.30mM : int [1:2891] 1 1 0 0 0 1 1 1 1 0 ...
..$ K.40mM : num [1:2891] 1 1 0 0 0 1 1 1 1 0 ...
..$ wash : int [1:2891] 0 0 1 0 0 0 0 0 0 0 ...
..$ TTA_A2.1uM : int [1:2891] 0 0 1 0 0 0 0 0 0 0 ...
..$ K.10mM_TTA_A2.1uM: int [1:2891] 0 0 1 0 0 0 0 0 0 0 ...
..$ TTA_A2.1uM.1 : int [1:2891] 0 0 1 0 0 0 0 0 0 0 ...
..$ K.20mM_TTA_A2.1uM: int [1:2891] 0 1 1 0 0 1 1 0 0 0 ...
..$ TTA_A2.1uM.2 : int [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ K.30mM_TTA_A2.1uM: int [1:2891] 1 1 1 0 0 1 1 1 1 0 ...
..$ TTA_A2.1uM.3 : int [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ K.40mM_TTA_A2.1uM: int [1:2891] 1 1 1 0 0 1 1 1 1 0 ...
..$ X10.washes : int [1:2891] 0 0 0 0 0 0 0 1 0 0 ...
..$ AITC.100uM : num [1:2891] 0 0 0 0 0 0 0 0 1 0 ...
..$ menthol.400uM : num [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ capsaicin.300nM : num [1:2891] 0 0 0 0 0 0 0 1 1 0 ...
..$ drop : num [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ epad : num [1:2891] 0 0 0 0 0 0 0 0 0 0 ...
..$ cy5.bin : num [1:2891] 1 1 NA NA NA 0 0 1 1 NA ...
..$ gfp.bin : num [1:2891] 0 0 NA NA NA 0 1 1 1 NA ...
$ scp :'data.frame': 2891 obs. of 119 variables:
..$ mean : num [1:2891] 0.0386 0.0949 0.3191 0.2424 0.3481 ...
..$ sd : num [1:2891] 0.0858 0.1636 0.1985 0.0907 0.1623 ...
..$ snr.iws : num [1:2891] 324.4 168.7 86.3 142.9 99.4 ...
..$ snr.ows : num [1:2891] 8.79 0 34.88 153.61 78.95 ...
..$ snr.iwc : int [1:2891] 11 7 12 33 18 10 9 5 6 31 ...
..$ snr.owc : int [1:2891] 1 0 6 35 11 5 0 1 0 33 ...
..$ bl.diff : num [1:2891] 0.0048 0.02348 0.01199 0.00311 0.00466 ...
..$ earl.bl.diff : num [1:2891] 0.00586 0.03011 0.009 0.00375 0.00586 ...
..$ late.bl.diff : num [1:2891] 0.00374 0.01684 0.01499 0.00248 0.00346 ...
..$ K.15mM.snr : num [1:2891] 10.68 0 3.29 0 3.12 ...
..$ K.15mM.tot : num [1:2891] 2.4 1.06 16.5 8.38 15.44 ...
..$ K.15mM.max : num [1:2891] 0.1062 0.0476 0.526 0.339 0.4987 ...
..$ K.15mM.ph.a.r : num [1:2891] 22.6 22.3 31.4 24.7 31 ...
..$ K.15mM.wm : int [1:2891] 13 27 38 35 27 14 14 30 16 18 ...
..$ RIIIJ.1uM.snr : num [1:2891] 0 0 2.61 5.47 5.1 ...
..$ RIIIJ.1uM.tot : num [1:2891] 1.443 0.883 34.854 30.743 63.297 ...
..$ RIIIJ.1uM.max : num [1:2891] 0.0249 0.0189 0.4184 0.4827 0.8156 ...
..$ RIIIJ.1uM.ph.a.r : num [1:2891] 58 46.8 83.3 63.7 77.6 ...
..$ RIIIJ.1uM.wm : int [1:2891] 1 1 20 97 64 4 1 10 1 102 ...
..$ K.15mM.1.snr : num [1:2891] 9.52 14.38 2.37 4.23 4.92 ...
..$ K.15mM.1.tot : num [1:2891] 2.06 6.55 7.41 10.28 26.1 ...
..$ K.15mM.1.max : num [1:2891] 0.0947 0.3636 0.3796 0.3735 0.7872 ...
..$ K.15mM.1.ph.a.r : num [1:2891] 21.7 18 19.5 27.5 33.1 ...
..$ K.15mM.1.wm : int [1:2891] 11 19 1 12 26 1 13 20 26 22 ...
..$ K.15mM.2.snr : num [1:2891] 13.11 0 2.29 5.87 0 ...
..$ K.15mM.2.tot : num [1:2891] 2.81 1.52 11.56 16.1 9.04 ...
..$ K.15mM.2.max : num [1:2891] 0.1304 0.0501 0.3657 0.5185 0.4132 ...
..$ K.15mM.2.ph.a.r : num [1:2891] 21.5 30.3 31.6 31.1 21.9 ...
..$ K.15mM.2.wm : int [1:2891] 11 15 6 9 45 14 13 27 17 1 ...
..$ K.15mM.3.snr : num [1:2891] 9.98 0 2.33 4.35 3.38 ...
..$ K.15mM.3.tot : num [1:2891] 2.097 0.643 10.087 10.61 14.913 ...
..$ K.15mM.3.max : num [1:2891] 0.0993 0.0157 0.3731 0.384 0.5405 ...
..$ K.15mM.3.ph.a.r : num [1:2891] 21.1 40.9 27 27.6 27.6 ...
..$ K.15mM.3.wm : int [1:2891] 11 15 11 9 44 43 30 29 18 39 ...
..$ K.20mM.snr : num [1:2891] 16.76 12.24 0 3.96 2.4 ...
..$ K.20mM.tot : num [1:2891] 3.48 6.28 8.92 10.08 8.47 ...
..$ K.20mM.max : num [1:2891] 0.167 0.31 0.294 0.35 0.384 ...
..$ K.20mM.ph.a.r : num [1:2891] 20.9 20.3 30.4 28.8 22 ...
..$ K.20mM.wm : int [1:2891] 12 15 45 11 23 13 13 15 15 42 ...
..$ K.30mM.snr : num [1:2891] 42.53 34.45 2.34 4.73 2.1 ...
..$ K.30mM.tot : num [1:2891] 7.78 24.09 10.64 12.82 9.01 ...
..$ K.30mM.max : num [1:2891] 0.423 0.871 0.375 0.418 0.336 ...
..$ K.30mM.ph.a.r : num [1:2891] 18.4 27.7 28.4 30.7 26.8 ...
..$ K.30mM.wm : int [1:2891] 14 12 29 16 42 11 12 13 13 38 ...
..$ K.40mM.snr : num [1:2891] 100.04 37.65 2.29 3.39 4.27 ...
..$ K.40mM.tot : num [1:2891] 21.07 27.61 12.06 7.51 23.41 ...
..$ K.40mM.max : num [1:2891] 0.995 0.952 0.366 0.299 0.683 ...
..$ K.40mM.ph.a.r : num [1:2891] 21.2 29 32.9 25.1 34.3 ...
..$ K.40mM.wm : int [1:2891] 12 11 30 31 30 11 11 11 11 39 ...
..$ wash.snr : num [1:2891] 0 0 0 5.18 2.43 ...
..$ wash.tot : num [1:2891] 0.684 1.38 21.124 11.941 8.425 ...
..$ wash.max : num [1:2891] 0.0189 0.0343 0.67 0.457 0.3882 ...
..$ wash.ph.a.r : num [1:2891] 36.2 40.2 31.5 26.1 21.7 ...
..$ wash.wm : int [1:2891] 23 9 43 28 35 1 40 1 1 45 ...
..$ TTA_A2.1uM.snr : num [1:2891] 0 0 5.53 4.47 2.08 ...
..$ TTA_A2.1uM.tot : num [1:2891] 1.11 2.39 92.68 31.72 19.43 ...
..$ TTA_A2.1uM.max : num [1:2891] 0.0159 0.0243 0.8852 0.3949 0.3328 ...
..$ TTA_A2.1uM.ph.a.r : num [1:2891] 69.6 98.4 104.7 80.3 58.4 ...
..$ TTA_A2.1uM.wm : int [1:2891] 1 1 58 93 43 44 2 1 1 103 ...
..$ K.10mM_TTA_A2.1uM.snr : num [1:2891] 0 0 0 3.3 3.33 ...
..$ K.10mM_TTA_A2.1uM.tot : num [1:2891] 0.366 0.85 29.063 8.2 12.853 ...
..$ K.10mM_TTA_A2.1uM.max : num [1:2891] 0.0115 0.0233 0.7704 0.352 0.5326 ...
..$ K.10mM_TTA_A2.1uM.ph.a.r: num [1:2891] 31.8 36.4 37.7 23.3 24.1 ...
..$ K.10mM_TTA_A2.1uM.wm : int [1:2891] 22 23 10 1 39 45 35 25 20 9 ...
..$ TTA_A2.1uM.1.snr : num [1:2891] 0 0 5.15 5.31 2.36 ...
..$ TTA_A2.1uM.1.tot : num [1:2891] 1.08 1.28 82.48 26.23 31.58 ...
..$ TTA_A2.1uM.1.max : num [1:2891] 0.0125 0.0137 0.8236 0.4689 0.4912 ...
..$ TTA_A2.1uM.1.ph.a.r : num [1:2891] 86.9 93.6 100.1 55.9 64.3 ...
..$ TTA_A2.1uM.1.wm : int [1:2891] 48 75 15 102 12 1 94 97 54 76 ...
..$ K.20mM_TTA_A2.1uM.snr : num [1:2891] 3.36 7.63 0 0 2.54 ...
..$ K.20mM_TTA_A2.1uM.tot : num [1:2891] 0.93 3.83 18.05 11.24 10.76 ...
..$ K.20mM_TTA_A2.1uM.max : num [1:2891] 0.0335 0.1928 0.5378 0.3536 0.4056 ...
..$ K.20mM_TTA_A2.1uM.ph.a.r: num [1:2891] 27.8 19.8 33.6 31.8 26.5 ...
..$ K.20mM_TTA_A2.1uM.wm : int [1:2891] 16 15 1 12 42 14 13 15 16 14 ...
..$ TTA_A2.1uM.2.snr : num [1:2891] 0 0 0 4.85 4.23 ...
..$ TTA_A2.1uM.2.tot : num [1:2891] 1.52 3.07 17.33 28.7 49.98 ...
..$ TTA_A2.1uM.2.max : num [1:2891] 0.0171 0.038 0.3359 0.4282 0.6772 ...
..$ TTA_A2.1uM.2.ph.a.r : num [1:2891] 89 80.9 51.6 67 73.8 ...
..$ TTA_A2.1uM.2.wm : int [1:2891] 50 1 1 50 102 115 108 1 1 60 ...
..$ K.30mM_TTA_A2.1uM.snr : num [1:2891] 23.82 28.21 2.95 4.45 3.75 ...
..$ K.30mM_TTA_A2.1uM.tot : num [1:2891] 4.35 17.83 12.79 10.46 17.18 ...
..$ K.30mM_TTA_A2.1uM.max : num [1:2891] 0.237 0.713 0.472 0.393 0.6 ...
..$ K.30mM_TTA_A2.1uM.ph.a.r: num [1:2891] 18.4 25 27.1 26.6 28.7 ...
..$ K.30mM_TTA_A2.1uM.wm : int [1:2891] 14 13 12 32 36 12 12 14 14 39 ...
..$ TTA_A2.1uM.3.snr : num [1:2891] 2.85 0 3.07 4.25 3.02 ...
..$ TTA_A2.1uM.3.tot : num [1:2891] 3.3 9.74 43.25 31.14 36.62 ...
..$ TTA_A2.1uM.3.max : num [1:2891] 0.0406 0.2185 0.4906 0.3747 0.4931 ...
..$ TTA_A2.1uM.3.ph.a.r : num [1:2891] 81.3 44.6 88.2 83.1 74.3 ...
..$ TTA_A2.1uM.3.wm : int [1:2891] 2 1 100 49 1 1 1 1 1 47 ...
..$ K.40mM_TTA_A2.1uM.snr : num [1:2891] 85.97 34.19 5.41 4.86 3.66 ...
..$ K.40mM_TTA_A2.1uM.tot : num [1:2891] 17.2 25.2 26.7 14 17.2 ...
..$ K.40mM_TTA_A2.1uM.max : num [1:2891] 0.855 0.864 0.866 0.429 0.585 ...
..$ K.40mM_TTA_A2.1uM.ph.a.r: num [1:2891] 20.1 29.1 30.8 32.6 29.4 ...
..$ K.40mM_TTA_A2.1uM.wm : int [1:2891] 12 11 11 33 27 11 11 11 12 10 ...
..$ X10.washes.snr : num [1:2891] 3.04 0 3.29 4.16 3.2 ...
..$ X10.washes.tot : num [1:2891] 2.66 6.78 28.43 24.84 35.49 ...
..$ X10.washes.max : num [1:2891] 0.0302 0.0895 0.527 0.4238 0.5118 ...
..$ X10.washes.ph.a.r : num [1:2891] 88.1 75.7 53.9 58.6 69.4 ...
..$ X10.washes.wm : int [1:2891] 27 1 45 8 51 1 1 1 1 97 ...
.. [list output truncated]
$ snr :'data.frame': 3184 obs. of 2892 variables:
..$ Time : num [1:3184] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.2 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.3 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.4 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.5 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.6 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.7 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.8 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.9 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.10 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.11 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.12 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.13 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.14 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.15 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.16 : num [1:3184] 0 0 0 0 0 ...
..$ X.17 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.18 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.19 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.20 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.21 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.22 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.23 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.24 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.25 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.26 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.27 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.28 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.29 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.30 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.31 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.32 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.33 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.34 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.35 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.36 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.37 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.38 : num [1:3184] 0 0 0 0 0 ...
..$ X.39 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.40 : num [1:3184] 0 0 0 0 0 ...
..$ X.41 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.42 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.43 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.44 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.45 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.46 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.47 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.48 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.49 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.50 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.51 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.52 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.53 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.54 : num [1:3184] 0 0 0 0 0 ...
..$ X.55 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.56 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.57 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.58 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.59 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.60 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.61 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.62 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.63 : num [1:3184] 0 0 0 0 0 ...
..$ X.64 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.65 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.66 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.67 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.68 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.69 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.70 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.71 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.72 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.73 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.74 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.75 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.76 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.77 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.78 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.79 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.80 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.81 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.82 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.83 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.84 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.85 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.86 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.87 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.88 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.89 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.90 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.91 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.92 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.93 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.94 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.95 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.96 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.97 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
..$ X.98 : num [1:3184] 0 0 0 0 0 0 0 0 0 0 ...
.. [list output truncated]
$ blc :'data.frame': 3184 obs. of 2892 variables:
..$ Time : num [1:3184] 0.002 0.218 0.232 0.249 0.265 0.286 0.303 0.32 0.337 0.354 ...
..$ X.1 : num [1:3184] 0 0 0 0.000531 0.00064 ...
..$ X.2 : num [1:3184] 0 0 0.000641 0.001477 0.00204 ...
..$ X.3 : num [1:3184] 0 0.349 0.442 0.451 0.476 ...
..$ X.4 : num [1:3184] 0 0 0 0.000916 0.003656 ...
..$ X.5 : num [1:3184] 0 0 0.0518 0.111 0.155 ...
..$ X.6 : num [1:3184] 0 0 0 0.000958 0 ...
..$ X.7 : num [1:3184] 0 0.0045 0.00575 0.00583 0.0059 ...
..$ X.8 : num [1:3184] 0 0.00438 0.0054 0.00538 0.00556 ...
..$ X.9 : num [1:3184] 0 0.000557 0.000873 0.000977 0.000947 ...
..$ X.10 : num [1:3184] 0 0.0295 0.0621 0.0909 0.1174 ...
..$ X.11 : num [1:3184] 0 0.00224 0.00362 0.00451 0.00508 ...
..$ X.12 : num [1:3184] 0 0.00678 0.00968 0.01105 0.01239 ...
..$ X.13 : num [1:3184] 0 0 0 0.000399 0.000418 ...
..$ X.14 : num [1:3184] 0 0 0 0.00082 0 ...
..$ X.15 : num [1:3184] 0.00 0.00 0.00 2.92e-05 0.00 ...
..$ X.16 : num [1:3184] 0 0.0143 0.0194 0.0214 0.0231 ...
..$ X.17 : num [1:3184] 0 0.00505 0.00672 0.00732 0.00794 ...
..$ X.18 : num [1:3184] 0 0 0 0.000294 0.000455 ...
..$ X.19 : num [1:3184] 0 0.019 0.0262 0.0294 0.0325 ...
..$ X.20 : num [1:3184] 0 0.00278 0.0036 0.00376 0.00404 ...
..$ X.21 : num [1:3184] 0 0.0729 0.078 0.0636 0.0537 ...
..$ X.22 : num [1:3184] 0 0.00202 0.00265 0.00275 0.00281 ...
..$ X.23 : num [1:3184] 0 0.00471 0.00611 0.00638 0.0067 ...
..$ X.24 : num [1:3184] 0 0.000272 0.000469 0.000661 0.000931 ...
..$ X.25 : num [1:3184] 0 0.00209 0.00279 0.00302 0.00331 ...
..$ X.26 : num [1:3184] 0.00 0.00 0.00 7.12e-05 0.00 ...
..$ X.27 : num [1:3184] 0.00 4.08e-05 7.17e-04 1.65e-03 2.68e-03 ...
..$ X.28 : num [1:3184] 0 0.00103 0.00126 0.00124 0.00133 ...
..$ X.29 : num [1:3184] 0 0.00745 0.00975 0.01033 0.01119 ...
..$ X.30 : num [1:3184] 0 0 0 0.0137 0.0223 ...
..$ X.31 : num [1:3184] 0 0 0 0.000188 0.000152 ...
..$ X.32 : num [1:3184] 0 0.0826 0.094 0.0858 0.0834 ...
..$ X.33 : num [1:3184] 0 0 0 0.00253 0 ...
..$ X.34 : num [1:3184] 0 0 0 0.00391 0.00487 ...
..$ X.35 : num [1:3184] 0 0 0 0.00542 0 ...
..$ X.36 : num [1:3184] 0 0 0 0.0118 0.0157 ...
..$ X.37 : num [1:3184] 0 0.288 0.364 0.375 0.404 ...
..$ X.38 : num [1:3184] 0 0.141 0.195 0.219 0.247 ...
..$ X.39 : num [1:3184] 0 0.00459 0.00611 0.0066 0.0071 ...
..$ X.40 : num [1:3184] 0 0.217 0.297 0.332 0.38 ...
..$ X.41 : num [1:3184] 0 0.0285 0.0568 0.0809 0.098 ...
..$ X.42 : num [1:3184] 0 0.000497 0.00044 0.000241 0.000148 ...
..$ X.43 : num [1:3184] 0 0 0 0.000981 0.001552 ...
..$ X.44 : num [1:3184] 0 0.00643 0.0076 0.00699 0.00651 ...
..$ X.45 : num [1:3184] 0 0 0 0.00617 0.00199 ...
..$ X.46 : num [1:3184] 0 0.00873 0.0116 0.01242 0.01322 ...
..$ X.47 : num [1:3184] 0 0 0 0.002843 0.000516 ...
..$ X.48 : num [1:3184] 0 0.00362 0.004 0.00359 0.00329 ...
..$ X.49 : num [1:3184] 0 0.035 0.0595 0.0777 0.0877 ...
..$ X.50 : num [1:3184] 0 0.0556 0.0901 0.116 0.1409 ...
..$ X.51 : num [1:3184] 0 0.00323 0.00421 0.00435 0.00444 ...
..$ X.52 : num [1:3184] 0 0 0.000241 0.000805 0.001143 ...
..$ X.53 : num [1:3184] 0 0 0 0.00238 0 ...
..$ X.54 : num [1:3184] 0 0.0551 0.0735 0.0793 0.0854 ...
..$ X.55 : num [1:3184] 0 0 0 0.001547 0.000534 ...
..$ X.56 : num [1:3184] 0 0.0349 0.0459 0.0489 0.0534 ...
..$ X.57 : num [1:3184] 0 0 0 0.00566 0 ...
..$ X.58 : num [1:3184] 0 0.041 0.0704 0.0943 0.1185 ...
..$ X.59 : num [1:3184] 0 0 0 0.00968 0.01002 ...
..$ X.60 : num [1:3184] 0 0.0304 0.0385 0.0397 0.0423 ...
..$ X.61 : num [1:3184] 0 0.0222 0.0294 0.0318 0.0345 ...
..$ X.62 : num [1:3184] 0 0.00589 0.00892 0.01079 0.01259 ...
..$ X.63 : num [1:3184] 0 0.11 0.146 0.158 0.172 ...
..$ X.64 : num [1:3184] 0 0 0 0.00343 0.0022 ...
..$ X.65 : num [1:3184] 0 0.0568 0.0763 0.0837 0.0943 ...
..$ X.66 : num [1:3184] 0 0 0 0 0 ...
..$ X.67 : num [1:3184] 0 0.00526 0.00685 0.0072 0.00773 ...
..$ X.68 : num [1:3184] 0.00 6.91e-05 7.08e-05 1.18e-04 1.08e-04 ...
..$ X.69 : num [1:3184] 0 0 0 0.0066 0 ...
..$ X.70 : num [1:3184] 0 0.208 0.267 0.28 0.306 ...
..$ X.71 : num [1:3184] 0 0.0018 0.00266 0.00308 0.00336 ...
..$ X.72 : num [1:3184] 0 0.0827 0.0876 0.0733 0.0724 ...
..$ X.73 : num [1:3184] 0 0.128 0.162 0.167 0.178 ...
..$ X.74 : num [1:3184] 0 0 0 0.00121 0.00142 ...
..$ X.75 : num [1:3184] 0 0.0036 0.00443 0.00433 0.00432 ...
..$ X.76 : num [1:3184] 0 0.0325 0.0411 0.0416 0.0433 ...
..$ X.77 : num [1:3184] 0 0 0 0.00165 0 ...
..$ X.78 : num [1:3184] 0 0.147 0.179 0.171 0.162 ...
..$ X.79 : num [1:3184] 0 0.000763 0.000782 0.000779 0.000531 ...
..$ X.80 : num [1:3184] 0 0 0 0.00166 0 ...
..$ X.81 : num [1:3184] 0 0.00501 0.00605 0.00564 0.00507 ...
..$ X.82 : num [1:3184] 0 0.00766 0.00975 0.01004 0.01043 ...
..$ X.83 : num [1:3184] 0 0.00154 0.00217 0.0024 0.00251 ...
..$ X.84 : num [1:3184] 0 0.0199 0.0339 0.0489 0.0618 ...
..$ X.85 : num [1:3184] 0 0 0 0.00242 0.00351 ...
..$ X.86 : num [1:3184] 0 0.00633 0.0125 0.01773 0.02189 ...
..$ X.87 : num [1:3184] 0 0.259 0.336 0.354 0.379 ...
..$ X.88 : num [1:3184] 0 0 0 0.00757 0 ...
..$ X.89 : num [1:3184] 0.00 0.00 0.00 6.68e-05 0.00 ...
..$ X.90 : num [1:3184] 0 0.0101 0.0125 0.0127 0.0133 ...
..$ X.91 : num [1:3184] 0.00 0.00 5.74e-05 2.94e-03 3.67e-03 ...
..$ X.92 : num [1:3184] 0 0 0 0.0207 0.0307 ...
..$ X.93 : num [1:3184] 0 0.0988 0.1163 0.1075 0.1026 ...
..$ X.94 : num [1:3184] 0 0 0.0191 0.0443 0.0653 ...
..$ X.95 : num [1:3184] 0 0.166 0.219 0.233 0.252 ...
..$ X.96 : num [1:3184] 0 0 0 0.00109 0.00163 ...
..$ X.97 : num [1:3184] 0 0.00345 0.00488 0.00551 0.00607 ...
..$ X.98 : num [1:3184] 0 0 0 0.00195 0 ...
.. [list output truncated]
$ img1 : num [1:2048, 1:2048, 1:3] 0.576 0.561 0.525 0.51 0.486 ...
$ img2 : num [1:2048, 1:2048, 1:3] 0.0353 0.0353 0.0314 0.0314 0.0314 ...
$ img3 : num [1:2048, 1:2048, 1:3] 0.0353 0.0353 0.0314 0.0314 0.0314 ...
$ img4 : num [1:2048, 1:2048, 1:3] 0 0 0 0 0 0 0 0 0 0 ...
$ img5 : num [1:2048, 1:2048, 1:3] 0 0 0 0 0 0 0 0 0 0 ...
$ img6 : num [1:2048, 1:2048, 1:4] 0 0 0 0 0 0 0 0 0 0 ...
$ img7 : num [1:2048, 1:2048, 1:3] 0.624 0.553 0.51 0.463 0.365 ...
$ img8 : num [1:2048, 1:2048, 1:3] 0 0 0 0 0 0 0 0 0 0 ...
$ grps : Named int [1:2891] 1 2 3 3 3 2 2 2 4 3 ...
..- attr(*, "names")= chr [1:2891] "X.1" "X.2" "X.3" "X.4" ...
$ cell.types:List of 19
..$ neurons : chr [1:1332] "X.1" "X.2" "X.6" "X.7" ...
..$ glia : chr [1:1415] "X.3" "X.4" "X.5" "X.10" ...
..$ L1 : chr [1:12] "X.193" "X.263" "X.268" "X.857" ...
..$ L2 : chr [1:11] "X.1210" "X.1330" "X.1343" "X.1692" ...
..$ L3 : chr [1:21] "X.71" "X.310" "X.464" "X.599" ...
..$ L4 : chr [1:24] "X.430" "X.458" "X.845" "X.1121" ...
..$ L5 : chr [1:9] "X.27" "X.206" "X.1037" "X.1451" ...
..$ L6 : chr [1:53] "X.7" "X.52" "X.119" "X.126" ...
..$ L5.split: chr "X.19"
..$ G7 : chr [1:22] "X.199" "X.289" "X.298" "X.387" ...
..$ G8 : chr [1:187] "X.8" "X.17" "X.28" "X.39" ...
..$ G9 : chr [1:104] "X.9" "X.18" "X.31" "X.34" ...
..$ G10 : chr [1:9] "X.847" "X.1180" "X.2863" "X.2694" ...
..$ R11 : chr [1:58] "X.150" "X.178" "X.187" "X.239" ...
..$ R12 : chr [1:23] "X.312" "X.528" "X.1045" "X.1072" ...
..$ R13 : chr [1:255] "X.68" "X.82" "X.83" "X.103" ...
..$ N14 : chr [1:130] "X.587" "X.968" "X.983" "X.987" ...
..$ N15 : chr [1:114] "X.15" "X.152" "X.205" "X.228" ...
..$ N16 : chr [1:33] "X.24" "X.67" "X.218" "X.258" ...
$ census :List of 17
..$ L1 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:12] "X.193" "X.263" "X.268" "X.857" ...
..$ L2 :List of 13
.. ..$ block: chr [1:11] "X.1210" "X.1330" "X.1343" "X.1692" ...
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:11] "X.1210" "X.1330" "X.1343" "X.1692" ...
..$ L3 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:21] "X.71" "X.310" "X.464" "X.599" ...
..$ L4 :List of 13
.. ..$ block: chr [1:2] "X.1121" "X.2851"
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:24] "X.430" "X.458" "X.845" "X.1121" ...
..$ L5 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:9] "X.27" "X.206" "X.1037" "X.1451" ...
..$ L6 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:53] "X.7" "X.52" "X.119" "X.126" ...
..$ L5.split: logi NA
..$ G7 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:22] "X.199" "X.289" "X.298" "X.387" ...
..$ G8 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:187] "X.8" "X.17" "X.28" "X.39" ...
..$ G9 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:104] "X.9" "X.18" "X.31" "X.34" ...
..$ G10 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:9] "X.847" "X.1180" "X.2863" "X.2694" ...
..$ R11 :List of 13
.. ..$ block: chr "X.522"
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:58] "X.150" "X.178" "X.187" "X.239" ...
..$ R12 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:23] "X.312" "X.528" "X.1045" "X.1072" ...
..$ R13 :List of 13
.. ..$ block: chr "X.2704"
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:255] "X.68" "X.82" "X.83" "X.103" ...
..$ N14 :List of 13
.. ..$ block: chr [1:126] "X.587" "X.968" "X.983" "X.987" ...
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:130] "X.587" "X.968" "X.983" "X.987" ...
..$ N15 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:114] "X.15" "X.152" "X.205" "X.228" ...
..$ N16 :List of 13
.. ..$ block: logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : logi(0)
.. ..$ NA : chr [1:33] "X.24" "X.67" "X.218" "X.258" ...
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