Man pages for leeleavitt/procPharm
Constellation Pharmacology Data Analysis

barPlotterDisplay census in a barplot
boxPlotListNew Boxplot Function
bp.selectorInteractive statistic maker. This creates a statistic based...
bScorebinary score for all cells for the regions of interest bScore...
bscore2Binary scoring dependent upon score const pharm talbe values...
Cell_Typer_2Function with 3 options_ Edit_ct, classify UL , classify...
cell.viewFunction to View all cells in grid, zoomed in.
cellzandFunction to select rows based on collumn parameters dat can...
census.brewerThis is the old way to create a census! Recently updated...
census_to_tableLegacy function to convert the census into binary collumns
col_binnerNow lets create the function to put premade groups into a...
CollectMultigiven a list of file names collect and merge all bin scp and...
combinnerCreate Binary Classes of cells dat IS THE rd. INPUT LEVS, IS...
c.sortfunction to obtained sorted cell names based off collumn...
c.sort.2Function to smart sort
density_ct_plotterThis function plots the stat(data.frame form) of all cells,...
fancyBinFunction to use the neural networks within the python package
gif_makerI have a series of pdf files
gif_png_makerI have a series of pdf files
imageExtractorFunction to convert the full image into individual cell...
ImageFillerAdd images to the RD.experiment file
ImageFillerv2Add images to the RD.experiment file
imageProbMakerFunction to create the cy5.bin and the gfp.bin collumns in...
LinesEvery.5LinesEvery same as .4 but has image at begining of trace and...
LinesStack.2intereact: LOGICAL; TRUE select cell groups to work though...
loggerFunction to track the various users data during analysis The...
multi.pic.zoomView Individual cell picture
named.listcreate a list that uses the names input for the names in the...
NumBlankstake a defined window vector and number of the contiguos...
PeakFunc7This peak func allows for multiple t.types to be plotted...
pf.functionCreate Binary Classes of cells
pf_summaryThis takes a pf and allows you to create a binarry table...
pharming_harvestMain robust import function
probMakerFunction to return probability scores from the models
ProcConstPharmFunction to perform the basline correction
RDViewRDView This is a function that allows you to correct the...
RDView_2RDVIew but for traces, also identifies the score of the...
ReadDataDump.lee.2Old school way to import data
RegionDeleterSomething happened within you experiment and you need to...
renamerFunction to rename experiment to the name of the folder it...
ROIreviewthree tests Drop (confirm), Red (confirm) and Green (confirm)...
saveRDFunciton to save the work along with create a unique...
ScoreConstPharmcalculate a table of cell characteristics globally and within...
ScoreConstPharm.2calculate a table of cell characteristics globally and within...
TableBrewerfunction to build a table with defined cell types, and...
tcdTraceClick.d ev(tcd)
TraceBrewerThis is our trace cleaning protocol
traceProbMakerThis function creates the binary scores for AITC, menthol,...
traceSticherThis fucntion stiches two videos together
uncertaintyMakerThis function calculates uncertainty for each probability...
WindowRepairMade a mistake in you window regions? If it is only the time...
WindowRepair_docxMade a mistake in you window regions? If it is only the time...
XYtraceFunction allows for selection and deselection of cells to...
XYtrace.2More advanced image clickers
leeleavitt/procPharm documentation built on July 20, 2020, 8:05 p.m.