tcd: TraceClick.d ev(tcd)

In leeleavitt/procPharm: Constellation Pharmacology Data Analysis

Description

This function is an interactive dashboard for viewing your exeriments.

Usage

tcd(
  dat,
  cells = NULL,
  img = "img1",
  l.img = c("img1"),
  yvar = FALSE,
  t.type = "t.dat",
  plot.new = F,
  info = T,
  pts = T,
  lns = T,
  bcex = 1,
  levs = NULL,
  klevs = NULL,
  sft = NULL,
  underline = T,
  zf = 20,
  lw = 2,
  sf = 1,
  dat.name = NULL,
  view_func_description = F,
  save_question = T,
  track = T
)

Arguments

up	arrow move through list specified in entry
down	arrow Move down through list spcified in entry
a	place cell into the correct group in cell_types
1-0	add cells to g.names1 through g.name10
q	Quits the program
c	add cells to g.names
d	details for peakfunc
D	LinesEvery seperation
f	New trace fitting for pottassium pulses
F	New smoothing factor for fit trace
ctrl-F	function to correct the scoring
i	Select image to display on Stacked Traces
I	image for Multiview
l	choose window region to display on stack trace plot
o	order all cells in a new way
O	order cells in Stacked Traces and multiview
p	Toggles points on graph
P	Pick a group/cells to click through
R	reset group specified
r	rename group names
s	stack selected Groups
t	brings up list of RD file. Select Trace (anything starting with t or mp)
u	Underlines the Trace
v	Show where cells are located and give zoomed in view
V	choose cell info to display on traces
w	Change Line Width on plot
x	score this cell as a drop
X	score cell as not dropped.
y	Zoom yaxis automatically
z	image zoom
F1	advanced stat comparison statistic creator
F2	advanced stat peak comparison min max norm creator
F3	Density plot visualization
F5	does something

Details

The output of this function returns a list of vectors of cell names There are a few ways to input cell names into this program;

1)Character; ex. cells=c('X.1','X.2','X.3','X.4') 2)Numeric; ex. cells=c(1,2,3,4) 3)Character Lists; ex. active.cells[[1]]

Character lists/Cell groups, can be handled and displayed in a variety of ways. Using Keyboard commands (CASE SENSITVE);

leeleavitt/procPharm documentation built on Feb. 3, 2021, 11:43 a.m.