Files in leeleavitt/procPharm

Constellation Pharmacology Data Analysis

.DS_Store

.RProfile

.Rbuildignore

.gitignore

.vscode/settings.json

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

R/RDView.R R/cellTyping.R R/dataManipulation.R R/image.R R/import.R R/interactive.R R/logger.R R/modelTools.R R/roiReview.R R/tcd.R R/tracePrep.R R/traceStats.R R/traceVisualization.R R/utils.R R/visualization.R R/zzz.R README.md extras/170103.doodles.lee.R extras/170103.doodles.lee.distributing.R extras/190206_ephyz_pharm.r extras/Cell Profiler Import/._160923.cp.dat.import.r extras/Cell Profiler Import/160923.cp.dat.import.r extras/Cell Profiler Import/160928.cp.import.r extras/Cell Profiler Import/161003.cp.import.r extras/Cell Profiler Import/161014.full.cp.import.r extras/Cell Profiler Import/161020.cp.import.r extras/Cell Profiler Import/161025.cp.import.r extras/Cell Profiler Import/161219.full.cp.import.r extras/Cell Profiler Import/161228.full.cp.import.r extras/Cell Profiler Import/170103.full.cp.import.r extras/Cell Profiler Import/170106.full.cp.import.r extras/Cell Profiler Import/170109.full.cp.import.r extras/Cell Profiler Import/170117.full.cp.import.r extras/Cell Profiler Import/170119.full.cp.import.r extras/Cell Profiler Import/170130.full.cp.import.NODAPI.r extras/Cell Profiler Import/170203.full.cp.import.r extras/Cell Profiler Import/170209.chinu.data.full.cp.import.r extras/Cell Profiler Import/170322.full.cp.import.r extras/Cell Profiler Import/170323.full.cp.import.r extras/Cell Profiler Import/170410.full.cp.import.r extras/Cell Profiler Import/170525.full.cp.import.gfp.tritc.dapi.r extras/Cell Profiler Import/170525.full.cp.import.gfp.tritc.r extras/Cell Profiler Import/170526.full.cp.import.mario.r extras/Cell Profiler Import/170630.full.cp.import.gfp.tritc.r extras/Cell Profiler Import/170824.full.cp.import.tritc.dapi.r extras/Cell Profiler Import/171002.full.cp.import.gfp.cy5.dapi.chinufix.r extras/Cell Profiler Import/171002.full.cp.import.gfp.cy5.dapi.r extras/Cell Profiler Import/171002.full.cp.import.gfp.cy5.r extras/Cell Profiler Import/171116.full.cp.import.gfp.cy5.dapi.abby.r extras/Cell Profiler Import/Troublshoot.2.r extras/Cell Profiler Import/Troublshoot.r extras/Documentation/RDcomp.md extras/Documentation/installation.md extras/Documentation/tcd.md extras/Kevin Chase How to Process/@DoseResponse.R extras/Kevin Chase How to Process/@Process.Multi.102116.R extras/Kevin Chase How to Process/SelectGrid.kevin.2048.R extras/Kevin Chase How to Process/SelectGrid.kevin.R extras/Kevin Chase How to Process/common usage.R extras/Kevin Chase How to Process/procPharm.0.2.9.R extras/Kevin Chase How to Process/tutorial.for.traceselectlarge.R

extras/Procpharm Legacy/161010.RD.repair.r

extras/Procpharm Legacy/161019.RD.repair.r extras/Procpharm Legacy/SelectGrid.lee.R extras/Procpharm Legacy/procPharm 170210 ([e-mail] 2).r extras/Procpharm Legacy/procPharm 170210 ([e-mail]).r extras/Procpharm Legacy/procPharm.160607.r extras/Procpharm Legacy/procPharm.160929.r extras/Procpharm Legacy/procPharm.161027 (2).r extras/Procpharm Legacy/procPharm.161027 (4).r extras/Procpharm Legacy/procPharm.161027.r extras/Procpharm Legacy/procpharm.dev.r

extras/RD.200309.30.m.m3.p1.Rdata

extras/README.R extras/TopView.for.lee/LinesEvery.TV.R extras/TopView.for.lee/PlotHeatMat.R extras/TopView.for.lee/TopView.R

extras/Z_drive_Mounting_Information_1.docx

extras/cell_type_checker.r extras/deployPeakDeepDetect.r extras/ecdfTesting.R

extras/farm.txt

extras/gifWT/F1function.gif

extras/gifWT/F2function.gif

extras/gifWT/advancedTraceFunctioning.gif

extras/gifWT/openTCD.gif

extras/gifWT/tcdImage.gif

extras/gifWT/tcdIntroduction.gif

extras/howToPackage.R extras/labDriveInstall/README.R extras/labDriveInstall/README.md

extras/labDriveInstall/Rprofile.site

extras/miscellaneous/folder_sizer.r extras/procPharm 170210.r extras/procPharm MAC edits.r extras/procPharm distributing.r

extras/procPharm_MacOS_setup.docx

extras/procPharm_MacOS_setup.md extras/rdSave.r

extras/tmp.png

extras/troubeshootClustering .R

farm.txt

man/.Rhistory

man/._barPlotter.Rd

man/Cell_Typer_2.Rd man/Cell_Typer_3.Rd man/CollectMulti.Rd man/ImageFiller.Rd man/ImageFillerv2.Rd man/LinesEvery.5.Rd man/LinesStack.2.Rd man/NumBlanks.Rd man/PeakFunc7.Rd man/ProcConstPharm.Rd man/RDView.Rd man/RDView_2.Rd man/ROIreview.Rd man/ReadDataDump.lee.2.Rd man/RegionDeleter.Rd man/ScoreConstPharm.Rd man/TableBrewer.Rd man/TraceBrewer.Rd man/WindowRepair.Rd man/XYtrace.2.Rd man/XYtrace.Rd man/bScore.Rd man/barPlotter.Rd man/boxPlotList.Rd man/bp.selector.Rd man/bscore2.Rd man/c.sort.2.Rd man/c.sort.Rd man/cell.view.Rd man/cellTypeAdder.Rd man/cell_type_modeler.Rd man/cellzand.Rd man/census.brewer.Rd man/census_to_table.Rd man/col_binner.Rd man/combinner.Rd man/deStatMaker.Rd man/density_ct_plotter.Rd man/ecdfPlotter.Rd man/fancyBin.Rd man/gif_maker.Rd man/gif_png_maker.Rd man/ideStatMaker.Rd man/imageExtractor.Rd man/imageExtractorAll.Rd man/imageProbMaker.Rd man/kurtosis.Rd man/logger.Rd man/lungModeler.Rd man/modelChooser.Rd man/modelViewer.Rd man/multi.pic.zoom.Rd man/named.list.Rd man/pf.function.Rd man/pf_summary.Rd man/pharming_harvest.Rd man/potassiumModeler.Rd man/probMaker.Rd man/renamer.Rd man/saveRD.Rd man/tcd.Rd man/testPulseFinder.Rd man/traceProbMaker.Rd man/traceSticher.Rd man/uncertaintyMaker.Rd

python_packages/python_pharmer/python_pharmer/__init__.py

python_packages/python_pharmer/python_pharmer/nd2reader/__init__.py

python_packages/python_pharmer/python_pharmer/nd2reader/artificial.py

python_packages/python_pharmer/python_pharmer/nd2reader/common.py

python_packages/python_pharmer/python_pharmer/nd2reader/common_raw_metadata.py

python_packages/python_pharmer/python_pharmer/nd2reader/exceptions.py

python_packages/python_pharmer/python_pharmer/nd2reader/label_map.py

python_packages/python_pharmer/python_pharmer/nd2reader/legacy.py

python_packages/python_pharmer/python_pharmer/nd2reader/parser.py

python_packages/python_pharmer/python_pharmer/nd2reader/raw_metadata.py

python_packages/python_pharmer/python_pharmer/nd2reader/reader.py

python_packages/python_pharmer/python_pharmer/peakDeepDetect/__init__.py

python_packages/python_pharmer/python_pharmer/peakDeepDetect/featureMaker.py

python_packages/python_pharmer/python_pharmer/peakDeepDetect/models/AITC_100uM_MAIN.h5

python_packages/python_pharmer/python_pharmer/peakDeepDetect/models/Capsaicin_300nM_MAIN.h5

python_packages/python_pharmer/python_pharmer/peakDeepDetect/models/K_40mM_MAIN.h5

python_packages/python_pharmer/python_pharmer/peakDeepDetect/models/Menthol_400uM_MAIN.h5

python_packages/python_pharmer/python_pharmer/peakDeepDetect/models/cy5.h5

python_packages/python_pharmer/python_pharmer/peakDeepDetect/models/cy5_2.h5

python_packages/python_pharmer/python_pharmer/peakDeepDetect/models/drop.h5

python_packages/python_pharmer/python_pharmer/peakDeepDetect/models/gfp.h5

python_packages/python_pharmer/python_pharmer/videoProcessing/__init__.py

python_packages/python_pharmer/python_pharmer/videoProcessing/videoTools.py

python_packages/python_pharmer/setup.py

python_packages/python_pharmer/testing/videoRoiMeasure.py

leeleavitt/procPharm documentation built on Feb. 3, 2021, 11:43 a.m.