| barPlotter | Display census in a barplot |
| boxPlotList | New Boxplot Function |
| bp.selector | Interactive statistic maker. This creates a statistic based... |
| bScore | binary score for all cells for the regions of interest bScore... |
| bscore2 | Binary scoring dependent upon score const pharm talbe values... |
| cellTypeAdder | Add the original cell types to the RD.experiment This... |
| cell_type_modeler | Using marios cell type models I will create the cell_type... |
| Cell_Typer_2 | Function with 3 options_ Edit_ct, classify UL , classify... |
| Cell_Typer_3 | Updated cell_typer which incorporates neural networks to... |
| cell.view | Function to View all cells in grid, zoomed in. |
| cellzand | Function to select rows based on collumn parameters dat can... |
| census.brewer | This is the old way to create a census! Recently updated... |
| census_to_table | Legacy function to convert the census into binary collumns |
| col_binner | Now lets create the function to put premade groups into a... |
| CollectMulti | given a list of file names collect and merge all bin scp and... |
| combinner | Create Binary Classes of cells dat IS THE rd. INPUT LEVS, IS... |
| c.sort | function to obtained sorted cell names based off collumn... |
| c.sort.2 | Function to smart sort |
| density_ct_plotter | This function plots the stat(data.frame form) of all cells,... |
| deStatMaker | Function to create a direct effect stat. this stat is... |
| ecdfPlotter | This function displayed the newly create stats in an... |
| fancyBin | Function to use the neural networks within the python package |
| gif_maker | I have a series of pdf files |
| gif_png_maker | I have a series of pdf files |
| ideStatMaker | Function taht creates a ide stat automatically if you have... |
| imageExtractor | Function to convert the full image into individual cell... |
| imageExtractorAll | Function to gather images used inside cell_type_modeler.... |
| ImageFiller | Add images to the RD.experiment file |
| ImageFillerv2 | Add images to the RD.experiment file |
| imageProbMaker | Function to create the cy5.bin and the gfp.bin collumns in... |
| kurtosis | Function taken from e1071 package This observes the tails of... |
| LinesEvery.5 | LinesEvery same as .4 but has image at begining of trace and... |
| LinesStack.2 | intereact: LOGICAL; TRUE select cell groups to work though... |
| logger | Function to track the various users data during analysis The... |
| lungModeler | Function to apply a general purpose potassium model which was... |
| modelChooser | This function allows you to choose models to apply to your... |
| modelViewer | Function to view the cell type models. Pretty good vis |
| multi.pic.zoom | View Individual cell picture |
| named.list | create a list that uses the names input for the names in the... |
| NumBlanks | take a defined window vector and number of the contiguos... |
| PeakFunc7 | This peak func allows for multiple t.types to be plotted... |
| pf.function | Create Binary Classes of cells |
| pf_summary | This takes a pf and allows you to create a binarry table... |
| pharming_harvest | Main robust import function |
| potassiumModeler | Function to apply a general purpose potassium model which was... |
| probMaker | Function to return probability scores from the models |
| ProcConstPharm | Function to perform the basline correction |
| RDView | RDView This is a function that allows you to correct the... |
| RDView_2 | RDVIew but for traces, also identifies the score of the... |
| ReadDataDump.lee.2 | Old school way to import data |
| RegionDeleter | Something happened within you experiment and you need to... |
| renamer | Function to rename experiment to the name of the folder it... |
| ROIreview | three tests Drop (confirm), Red (confirm) and Green (confirm)... |
| saveRD | Funciton to save the work along with create a unique... |
| ScoreConstPharm | calculate a table of cell characteristics globally and within... |
| TableBrewer | function to build a table with defined cell types, and... |
| tcd | TraceClick.d ev(tcd) |
| testPulseFinder | This is a function that returns a regular expression to find... |
| TraceBrewer | This is our trace cleaning protocol |
| traceProbMaker | This function creates the binary scores for AITC, menthol,... |
| traceSticher | This fucntion stiches two videos together |
| uncertaintyMaker | This function calculates uncertainty for each probability... |
| WindowRepair | Made a mistake in you window regions? If it is only the time... |
| XYtrace | Function allows for selection and deselection of cells to... |
| XYtrace.2 | More advanced image clickers |
