enrich_wrapper: Over Representation analysis (ORA)
In lefeverde/lefutils: Robust R functions for common data wrangling tasks
enrich_wrapper R Documentation
Over Representation analysis (ORA)
Description
ORA wrapper which splits the long res list into
combined, up-regulated, and down-regulated list of
genes. It then performs ORA using clusterProfiler
Usage
enrich_wrapper(res_object, lfc_thresh = 0)
Arguments
res_object
res object in long(ish) format
lfc_thresh
lfc threshold absolute value
Value
data.frame of enriched pathways
lefeverde/lefutils documentation built on May 19, 2023, 4 p.m.
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| enrich_wrapper | R Documentation |
Over Representation analysis (ORA)
Description
ORA wrapper which splits the long res list into combined, up-regulated, and down-regulated list of genes. It then performs ORA using clusterProfiler
Usage
enrich_wrapper(res_object, lfc_thresh = 0)
Arguments
res_object |
res object in long(ish) format |
lfc_thresh |
lfc threshold absolute value |
Value
data.frame of enriched pathways
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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