get_limma_results: get results from limma fit object
In lefeverde/lefutils: Robust R functions for common data wrangling tasks
get_limma_results R Documentation
get results from limma fit object
Description
Takes a limma fit object created using either eBayes or
treat and returns a long data.frame of the results.
If the 'fit' object contains 'lods', then results are obtained using
topTable. Else, if the fit object contains a 'treat.lfc'
topTreat is used. If no coefficients are passed, it tries to guess
which are the relevant ones checking which are made up of 1's and 0's.
Usage
get_limma_results(limma_fit, coefs = NULL, print_summary = TRUE)
Arguments
limma_fit
fit object produced by limma
coefs
coefficients to return
print_summary
logical, whether print summary of the results
Value
data.frame of results in long(ish) format
lefeverde/lefutils documentation built on Sept. 18, 2024, 7:30 a.m.
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| get_limma_results | R Documentation |
get results from limma fit object
Description
Takes a limma fit object created using either eBayes or treat and returns a long data.frame of the results. If the 'fit' object contains 'lods', then results are obtained using topTable. Else, if the fit object contains a 'treat.lfc' topTreat is used. If no coefficients are passed, it tries to guess which are the relevant ones checking which are made up of 1's and 0's.
Usage
get_limma_results(limma_fit, coefs = NULL, print_summary = TRUE)
Arguments
limma_fit |
fit object produced by limma |
coefs |
coefficients to return |
print_summary |
logical, whether print summary of the results |
Value
data.frame of results in long(ish) format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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