order_by_similarity: Order DNA sequences by Levenshtein edit distance
In lefeverde/lefutils: Robust R functions for common data wrangling tasks
order_by_similarity R Documentation
Order DNA sequences by Levenshtein edit distance
Description
This function takes a vector of DNA sequences, computes pairwise distances
between them, and orders the sequences based on their similarity using
hierarchical clustering.
Usage
order_by_similarity(dna_strings)
Arguments
dna_strings
A character vector containing DNA sequences (A, C, G, T).
Value
A character vector of DNA sequences ordered by similarity.
Examples
dna_strings <- c("ACTG", "ACCG", "ATGC", "AGTC")
ordered_dna <- order_by_similarity(dna_strings)
print(ordered_dna)
lefeverde/lefutils documentation built on Sept. 18, 2024, 7:30 a.m.
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| order_by_similarity | R Documentation |
Order DNA sequences by Levenshtein edit distance
Description
This function takes a vector of DNA sequences, computes pairwise distances between them, and orders the sequences based on their similarity using hierarchical clustering.
Usage
order_by_similarity(dna_strings)
Arguments
dna_strings |
A character vector containing DNA sequences (A, C, G, T). |
Value
A character vector of DNA sequences ordered by similarity.
Examples
dna_strings <- c("ACTG", "ACCG", "ATGC", "AGTC")
ordered_dna <- order_by_similarity(dna_strings)
print(ordered_dna)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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