Man pages for leocrh/FPGC
Help functions to process Phenotypic Genomic and Climate data
| climdata | Download NASA POWER data |
| formatcoords | Format coordinates in degrees to decimal |
| Gmatrix | Generate G |
| h2 | Broad sense heritability in G + E + GxE models |
| h2single | Broad sense heritability in one way models |
| hapmaptonumeric | Recodes single nucleotides to numeric format |
| hapmaptonumeric_matrix | SNP in hapmap format to numeric |
| haptodoubl | Format IUPAC |
| Impute | Impute X |
| pcaStructure | PCA on G |
| periodicextraction | Summarize climdata outputs |
| rmhetsnp | Remove heterozygotes in X |
| rmminorallele | Filters MAF in X |
| rmMissingGenotypes | Removing missing genotypes/lines/entries/GIDs |
| rmmissingsnp | Remove missing from X |
| snpMatrixToNumeric | snpMatrixToNumeric |
| snptonumeric | Recodes double nucleotides to numeric format |
| trialstatslist | Process lists of lme4 models |
| varcomps | Extract variance components |
| XImp | Cleans Impute |
