hapmaptonumeric: Recodes single nucleotides to numeric format
In leocrh/FPGC: Help functions to process Phenotypic Genomic and Climate data
View source: R/HapmapToNumeric.R
hapmaptonumeric R Documentation
Recodes single nucleotides to numeric format
Description
This function takes one SNP marker with the single nucleotide hapmap format of snps to convert them to numeric format:
0, 1, 2. Where 0 and 2 are the homozygous genotypes and 1 the herozygote genotypes. 0 is assigned to the major allele
and 2 to the minor allele.
Usage
hapmaptonumeric(gd.snp)
Arguments
gd.snp
A single SNP vector in hapmap format
Value
Returns a SNP vector in numeric format
leocrh/FPGC documentation built on Nov. 15, 2024, 2:46 a.m.
R Package Documentation
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View source: R/HapmapToNumeric.R
| hapmaptonumeric | R Documentation |
Recodes single nucleotides to numeric format
Description
This function takes one SNP marker with the single nucleotide hapmap format of snps to convert them to numeric format: 0, 1, 2. Where 0 and 2 are the homozygous genotypes and 1 the herozygote genotypes. 0 is assigned to the major allele and 2 to the minor allele.
Usage
hapmaptonumeric(gd.snp)
Arguments
gd.snp |
A single SNP vector in hapmap format |
Value
Returns a SNP vector in numeric format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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