pcaStructure: PCA on G

In leocrh/FPGC: Help functions to process Phenotypic Genomic and Climate data

PCA on G

Description

Function to perform the PCA on the kinship matrix

Usage

pcaStructure(
  G,
  n.clusters = 3,
  plot.var = T,
  plot.pca = T,
  save.pca.plot = F,
  pca.plot.name = "PCA of G",
  ...
)

Arguments

G	Is the relationship matrix
n.clusters	The number of cluster to be solved over the kmeans algorithm
plot.var	Logial to indicate if the scree plot is displayed
plot.pca	Logical to indicate if the PCA plot is displayed with ggplot2
save.pca.plot	Logical to indicate if the PCA plot will be saved
pca.plot.name	Is the name of the file for the saved plot
...	Arguments passed to the ggsave function

leocrh/FPGC documentation built on Nov. 15, 2024, 2:46 a.m.