rmMissingGenotypes: Removing missing genotypes/lines/entries/GIDs
In leocrh/FPGC: Help functions to process Phenotypic Genomic and Climate data
View source: R/RemovingMissngGenotypes.R
rmMissingGenotypes R Documentation
Removing missing genotypes/lines/entries/GIDs
Description
This function removes genotyped individuals from a marker matrix that do not meet
the minimum threshold of marker information
Usage
rmMissingGenotypes(X = NULL, threshold = 50, plot.missing = FALSE)
Arguments
X
A marker matrix, usually obtained from the routines in FPGC
threshold
A threshold of missing marker information for genotypes in percentage
plot.missing
Logical. Indicating if a histograms of missing information printed
leocrh/FPGC documentation built on Nov. 15, 2024, 2:46 a.m.
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View source: R/RemovingMissngGenotypes.R
| rmMissingGenotypes | R Documentation |
Removing missing genotypes/lines/entries/GIDs
Description
This function removes genotyped individuals from a marker matrix that do not meet the minimum threshold of marker information
Usage
rmMissingGenotypes(X = NULL, threshold = 50, plot.missing = FALSE)
Arguments
X |
A marker matrix, usually obtained from the routines in FPGC |
threshold |
A threshold of missing marker information for genotypes in percentage |
plot.missing |
Logical. Indicating if a histograms of missing information printed |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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