hapmaptonumeric_matrix: SNP in hapmap format to numeric
In leocrh/FPGC: Help functions to process Phenotypic Genomic and Climate data
View source: R/HapmapToNumeric.R
hapmaptonumeric_matrix R Documentation
SNP in hapmap format to numeric
Description
This function applyes the hapmaptonumeric function on a dataframe of SNP in hapmap format to recode as numeric: 0, 1, 2.
The marker data requires that the SNPs are in columns and the individual are in rows.
Usage
hapmaptonumeric_matrix(X = NULL, snp.start.col = 2)
Arguments
X
SNP matrix in hapmapformat with single nucleotides
snp.start.col
An index number where the SNP dat starts in X
Value
A dataframe of SNPs in numeric format
leocrh/FPGC documentation built on Nov. 15, 2024, 2:46 a.m.
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View source: R/HapmapToNumeric.R
| hapmaptonumeric_matrix | R Documentation |
SNP in hapmap format to numeric
Description
This function applyes the hapmaptonumeric function on a dataframe of SNP in hapmap format to recode as numeric: 0, 1, 2. The marker data requires that the SNPs are in columns and the individual are in rows.
Usage
hapmaptonumeric_matrix(X = NULL, snp.start.col = 2)
Arguments
X |
SNP matrix in hapmapformat with single nucleotides |
snp.start.col |
An index number where the SNP dat starts in X |
Value
A dataframe of SNPs in numeric format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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