haptodoubl: Format IUPAC
In leocrh/FPGC: Help functions to process Phenotypic Genomic and Climate data

haptodoubl

R Documentation

Format IUPAC

Description

Function to convert HAPMAP format to double alleles with no separation, i.e, from A to AA, C to CC, R to AG, Y to CT, etc. Markers should be in columns and GIDs in rows.

Usage

haptodoubl(df = NULL, snp.col = NULL, is.gid.in.col = FALSE, snp.names = NULL)

Arguments

`df`	Is a data frame that contains SNP data in IUPAC format
`snp.col`	Is the index where the SNP data starts in the data frame. Set to NULL if the SNPs are in rows
`is.gid.in.col`	Is a Logical to indicate if the individuals are in columns (TRUE) or in rows (FALSE). Default value is FALSE
`snp.names`	Not used