beta2mtx: Convert tidy beta diversity table to a wide distance matrix
In leylabmpi/LeyLabRMisc: Ley Lab misc R functions, rmd templates, etc.
beta2mtx R Documentation
Convert tidy beta diversity table to a wide distance matrix
Description
The input should have the columns: Measure, SampleX, SampleY, Value
Usage
beta2mtx(dt, measure)
Arguments
dt
data.table, data.frame, or tibble
measure
which beta diversity measure (Measure column) to use?
Details
The output can be used for creating a PCoA. dendrogram, etc
Value
a symmetric matrix of distances
Examples
beta2mtx(beta_div_table, measure='braycurtis') %>%
calc_PCoA() %>%
pcoa2df
leylabmpi/LeyLabRMisc documentation built on Nov. 3, 2022, 3:45 p.m.
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| beta2mtx | R Documentation |
Convert tidy beta diversity table to a wide distance matrix
Description
The input should have the columns: Measure, SampleX, SampleY, Value
Usage
beta2mtx(dt, measure)
Arguments
dt |
data.table, data.frame, or tibble |
measure |
which beta diversity measure (Measure column) to use? |
Details
The output can be used for creating a PCoA. dendrogram, etc
Value
a symmetric matrix of distances
Examples
beta2mtx(beta_div_table, measure='braycurtis') %>%
calc_PCoA() %>%
pcoa2df
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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