mgnify_request: GET request from the ENA

In leylabmpi/LeyLabRMisc: Ley Lab misc R functions, rmd templates, etc.

GET request from the ENA

Description

GET request from the ENA

Usage

mgnify_request(
  url,
  max_pages = NULL,
  query = list(),
  verbose = TRUE,
  cache_file = "mgnify_request.RDS",
  cache_break = 10,
  use_cache = TRUE,
  ...
)

Arguments

url	ENA API url
max_pages	Max number of pages to return. If NULL, all pages returned.
query	Query list passed to httr::GET
verbose	Verbose output?
cache_file	File name to cache (checkpoint) the results. Useful for big queries in case the job is interuppted.
cache_break	Write cache file every N pages.
use_cache	Read the cache file, if it exists?
...	Parameters passed to httr::GET

Value

data.frame

Examples

mgnify_request('https://www.ebi.ac.uk/metagenomics/api/v1/biomes', max_pages = 3)

leylabmpi/LeyLabRMisc documentation built on Nov. 3, 2022, 3:45 p.m.