calculate_rarefaction_curves: Function for rarefaction analysis
In leylabmpi/LeyLabRMisc: Ley Lab misc R functions, rmd templates, etc.
calculate_rarefaction_curves R Documentation
Function for rarefaction analysis
Description
Running estimate_richness_phy() at multiple subsampling depths
Usage
calculate_rarefaction_curves(psdata, measures, depths, parallel = FALSE)
Arguments
psdata
phyloseq object
measures
Which diversity measures (see vegan package)
depths
Which sequencing depths? Example: c(10, 100, 1000)
Value
A dataframe
leylabmpi/LeyLabRMisc documentation built on Nov. 3, 2022, 3:45 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| calculate_rarefaction_curves | R Documentation |
Function for rarefaction analysis
Description
Running estimate_richness_phy() at multiple subsampling depths
Usage
calculate_rarefaction_curves(psdata, measures, depths, parallel = FALSE)
Arguments
psdata |
phyloseq object |
measures |
Which diversity measures (see vegan package) |
depths |
Which sequencing depths? Example: c(10, 100, 1000) |
Value
A dataframe
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.