foster2006 | R Documentation |
This is the data from Foster et al., A Mammalian Organelle Map by Protein Correlation Profiling, Cell 2006 (PMID 16615899). See below for more details.
data(foster2006)
The data is an instance of class MSnSet
from package MSnbase
.
This is a PCP experiment. Label-free quantification has been done on
a totla of 26 high and low density-separated fractions (see
pData(foster2006)
). A total of 1555 proteins have been
quantified in a subset of the fractions. The proteins are described in
the featureData
slot. Chi^2 calculations, as defined in the PCP
experiment, has been performed using marker proteins for a total of 8
organelles, as well as the authors' original assignment and notes are
available in the featureData
slot.
Supplemental data on http://www.cell.com/abstract/S0092-8674(06)00369-2.
Foster LJ, de Hoog CL, Zhang Y, Zhang Y, Xie X, Mootha VK, Mann M. A mammalian organelle map by protein correlation profiling. Cell. 2006 Apr 7;125(1):187-99. PubMed PMID: 16615899.
data(foster2006)
foster2006
phenoData(foster2006)
featureData(foster2006)
## organelle marker proteins
table(fData(foster2006)$train)
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