itzhak2016stcSILAC: Data from Itzhak et al. (2016)

In lgatto/pRolocdata: Data accompanying the pRoloc package

Data from Itzhak et al. (2016)

Description

Data from Daniel N Itzhak, Stefka Tyanova, Jurgen Cox and Georg HH Borner. Global, quantitative and dynamic mapping of protein subcellular localization. DOI:http://dx.doi.org/10.7554/eLife.16950 Published June 9, 2016 Cite as eLife 2016;10.7554/eLife.16950

It currently contains

• The second sheet contains the 6 replicates of the SILAC static data (Static data were used to genrate six deep organellar maps) and is made available as itzhak2016stcSILAC.

Usage

data("itzhak2016stcSILAC")

Source

This data was generated from Supplementary file 9 (https://elifesciences.org/content/5/e16950/supp-material9). See inst/scripts/itzhak2016.R for details.

Examples

data(itzhak2016stcSILAC)
itzhak2016stcSILAC
dim(itzhak2016stcSILAC)
pData(itzhak2016stcSILAC)

## only 1st replicate
dim(itzhak2016stcSILAC[, itzhak2016stcSILAC$rep == 1])


## filter out features with missing values
itzhak2016stcSILAC <- filterNA(itzhak2016stcSILAC)

library("pRoloc")
## Cell map
plot2D(itzhak2016stcSILAC)
## as in the paper
plot2D(itzhak2016stcSILAC, dims = c(1, 3))

lgatto/pRolocdata documentation built on Nov. 27, 2024, 12:12 a.m.