itzhak2016 | R Documentation |
Data from Daniel N Itzhak, Stefka Tyanova, Jurgen Cox and Georg HH Borner. Global, quantitative and dynamic mapping of protein subcellular localization. DOI:http://dx.doi.org/10.7554/eLife.16950 Published June 9, 2016 Cite as eLife 2016;10.7554/eLife.16950
It currently contains
The second sheet contains the 6 replicates of the SILAC static
data (Static data were used to genrate six deep organellar
maps) and is made available as itzhak2016stcSILAC
.
data("itzhak2016stcSILAC")
This data was generated from Supplementary file 9
(https://elifesciences.org/content/5/e16950/supp-material9). See
inst/scripts/itzhak2016.R
for details.
data(itzhak2016stcSILAC)
itzhak2016stcSILAC
dim(itzhak2016stcSILAC)
pData(itzhak2016stcSILAC)
## only 1st replicate
dim(itzhak2016stcSILAC[, itzhak2016stcSILAC$rep == 1])
## filter out features with missing values
itzhak2016stcSILAC <- filterNA(itzhak2016stcSILAC)
library("pRoloc")
## Cell map
plot2D(itzhak2016stcSILAC)
## as in the paper
plot2D(itzhak2016stcSILAC, dims = c(1, 3))
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