yeast: Saccharomyces cerevisiae spatial proteomics (2018)

In lgatto/pRolocdata: Data accompanying the pRoloc package

Saccharomyces cerevisiae spatial proteomics (2018)

Description

Data from 'The subcellular organisation of Saccharomyces cerevisiae' (submitted).

This dataset represents four biological replicate hyperLOPIT experiments performed in Saccharomyces cerevisiae cultured to early-mid exponential phase, in synthetic media with glucose as sole carbon source (SD-His media (Breker et al 2013)). These were carried out to produce a map of the spatial proteome of this organism under no-perturbed conditions. The associated quantitation data from these experiments were combined using the method described in reference. This dataset contains quantitative information for 2,847 proteins that were common across our four biological replicate experiments and information regarding localisation for all of the proteins in the combined experiment. Overall this dataset describes 936 proteins that localise to one of 12 subcellular locations in S. cerevisiae under our experimental conditions.

Usage

data("yeast2018")

Examples

data(yeast2018)

library("pRoloc")
par(mfrow = c(1, 2))
plot2D(yeast2018, main = "Markers")
addLegend(yeast2018, where = "bottomleft", cex = .7)
plot2D(yeast2018, fcol = "predicted.location", main = "Localisation")

lgatto/pRolocdata documentation built on Oct. 17, 2024, 10:16 p.m.