Files in lgatto/synapter
Label-free data analysis pipeline for optimal identification and quantitation
.Rbuildignore
.gitignores/all
.gitignores/devel
DESCRIPTION
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/MSnbase-extensions.R
R/exported_tools.R
R/fasta.R
R/figures.R
R/fragmentlibrary-functions.R
R/fragmentmatching-functions.R
R/fragments-functions.R
R/gui.R
R/master.R
R/readcsv-functions.R
R/requantify-functions.R
R/spectrum-functions.R
R/synapter-class.R
R/synapter-interface.R
R/synergise.R
R/update.R
R/utils.R
R/zzz.R
README.md
data/synapterTiny.rda
inst/CITATION
inst/doc/Bugs.md
inst/doc/Foreword.md
inst/extdata/04_test_database.fasta
inst/extdata/synapter.css
inst/reports/scripts/synergise.R
inst/reports/synergise1.Rmd
inst/reports/synergise2.Rmd
inst/scripts/run_test_report.R
man/MasterFdrResults-class.Rd
man/MasterPeptides-class.Rd
man/Synapter.Rd
man/createUniquePeptideDbRds.Rd
man/defunct.Rd
man/estimateMasterFdr.Rd
man/inspectPeptideScores.Rd
man/makeMaster.Rd
man/plotCrossMatching.Rd
man/requantify.Rd
man/rescaleForTop3.Rd
man/synapter-package.Rd
man/synapterGuide.Rd
man/synapterPlgsAgreement.Rd
man/synapterTinyData.Rd
man/synergise.Rd
man/synergise2.Rd
tests/testthat.R
tests/testthat/test_MSnbase-extensions.R
tests/testthat/test_fragmentlibrary-functions.R
tests/testthat/test_fragments-functions.R
tests/testthat/test_master-functions.R
tests/testthat/test_readcsv-functions.R
tests/testthat/test_requantify.R
tests/testthat/test_spectrum-functions.R
tests/testthat/test_utils.R
vignettes/Bugs.md
vignettes/Dotfiles/synapter2workflow.dot
vignettes/Figures/PLGS_create_databank1.jpg
vignettes/Figures/PLGS_create_databank2.jpg
vignettes/Figures/PLGS_db_search_options.jpg
vignettes/Figures/PLGS_output_files1.jpg
vignettes/Figures/PLGS_output_files2.jpg
vignettes/Figures/PLGS_output_files3.jpg
vignettes/Figures/synapter2workflow.png
vignettes/Foreword.md
vignettes/fragmentmatching.Rmd
vignettes/synapter.Rmd
vignettes/synapter.bib
vignettes/synapter2.Rmd
