ssGSEA.normalize: Normalize a vector of ssGSEA scores in the ssGSEA way.
In lianos/multiGSEA: A unified interface to a plethora of gene set enrichment analysis methods
Description
Usage
Arguments
Value
View source: R/scoreSingleSamples.R
Description
ssGSEA normalization (as implemented in GSVA (ssgsea.norm)) normalizes the
individual scores based on ALL scores calculated across samples AND
genesets. It does NOTE normalize the scores within each geneset
independantly of the others.
Usage
1
ssGSEA.normalize(x, bounds = range(x))
Arguments
x
a numeric vector of ssGSEA scores for a single signature
bounds
the maximum and minimum scores obvserved used to normalize
against.
Value
normalized numeric vector of x
lianos/multiGSEA documentation built on Nov. 17, 2020, 1:26 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/scoreSingleSamples.R
Description
ssGSEA normalization (as implemented in GSVA (ssgsea.norm)) normalizes the individual scores based on ALL scores calculated across samples AND genesets. It does NOTE normalize the scores within each geneset independantly of the others.
Usage
1 | ssGSEA.normalize(x, bounds = range(x))
|
Arguments
x |
a |
bounds |
the maximum and minimum scores obvserved used to normalize against. |
Value
normalized numeric vector of x
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.