API for lindberg-m/contextendR
Analyse genomic data with regard to sequence contexts
| Global functions | |
|---|---|
| add_positions | Source code |
| binary_enc | Man page Source code |
| count_kmers | Man page Source code |
| count_muts | Source code |
| count_trinucs | Man page Source code |
| encode_seqs | Man page Source code |
| extend_positions | Man page Source code |
| fisher_test_mutations | Source code |
| forest_kmer_importance_by_gini | Source code |
| get_context | Source code |
| get_logenv | Man page Source code |
| get_n_warnings | Man page Source code |
| handle_condition | Man page Source code |
| handle_debug | Man page Source code |
| handle_error | Man page Source code |
| handle_function_factory | Source code |
| handle_info | Man page Source code |
| handle_try_catch | Man page Source code |
| handle_warning | Man page Source code |
| inverse_logit | Man page Source code |
| kmer_freq | Man page Source code |
| kmer_logistic_regression | Man page Source code |
| kmer_random_forest | Man page Source code |
| log_debug | Man page Source code |
| log_error | Man page Source code |
| log_info | Man page Source code |
| log_warning | Man page Source code |
| melanoma_mutations_promoters | Man page |
| merge_rf_result | Source code |
| muts_encode | Source code |
| on_pyrs | Source code |
| plot_kmer_forest | Man page Source code |
| plot_kmer_logistic_regression | Man page Source code |
| plot_kmer_positions | Man page Source code |
| plot_trinuc_logistic_regression | Man page Source code |
| plot_wrapper | Source code |
| promoters | Man page |
| reset_n_warnings | Man page Source code |
| sample_from_chrom | Source code |
| sample_positions | Man page Source code |
| set_logfile | Man page Source code |
| set_logging_tee | Man page Source code |
| set_loglevel | Man page Source code |
| train_forest | Source code |
| unset_logfile | Man page Source code |
| unset_logging_tee | Man page Source code |
| verifyInput_extendPositions | Source code |
| verify_input_encodeSeqs | Source code |
