kmer_logistic_regression: Fit regularized multinomial regression model

In lindberg-m/contextendR: Analyse genomic data with regard to sequence contexts

Description

Fit a multinomal regression model on encoded kmer-data

Usage

kmer_logistic_regression(
  x,
  kmers,
  include_fit = FALSE,
  include_encoded = TRUE,
  ...
)

Arguments

x	Dataset, including mutations and pyrimidine based sequence contexts
kmers	String vector. Kmers to include when fitting signature
include_fit	Bool. Include the fitted 'glmnet' object in output?
include_encoded	Bool. Include the input data encoded to binary matrix?
...	Additional arguments to 'glmnet'

lindberg-m/contextendR documentation built on Jan. 8, 2022, 3:16 a.m.