handle_condition: Handle conditions and logging

In lindberg-m/contextendR: Analyse genomic data with regard to sequence contexts

Description

Minimal logging and error handling.

Usage

handle_condition(bool, msg, pfx = 1, retcode = 0, threshold = 2)

handle_debug(bool, msg)

handle_info(bool, msg)

handle_warning(bool, msg)

handle_error(bool, msg, stop = TRUE)

log_debug(msg)

log_info(msg)

log_warning(msg)

log_error(msg, stop = TRUE)

Arguments

bool	Boolean. If false - perform the logging
msg	String. Message to log
pfx	Int. Prefix to use in log-output. Only used internally
retcode	Int. Return code when 'bool' is not met. Only used internally
threshold	Int. Threshold to compare against the current logleve. Only used internally
stop	Bool. Results in a call to 'stop()' if condition is met for 'handle_error'. Result in 'stop()' for 'log_error'

Functions

• handle_debug: Handle debug

• handle_info: Handle info

• handle_warning: Handle warning

• handle_error: Handle error

• log_debug: Log debug

• log_info: Log info

• log_warning: Log warning

• log_error: Log error

lindberg-m/contextendR documentation built on Jan. 8, 2022, 3:16 a.m.