plot_kmer_forest: Plot Feature Selection Results
In lindberg-m/contextendR: Analyse genomic data with regard to sequence contexts
Description
Usage
Arguments
Value
View source: R/kmer_random_forest.R
Description
Create a scatterplot from the results given by 'kmer_random_forest' where
x and y axis show the mean decrease in gini for cytosines and thymines
respectively, and color indicate the log odds ratio for mutated kmers
Usage
1
plot_kmer_forest(rf_res, rm_trinucs = FALSE)
Arguments
rf_res
Output from a 'kmer_random_forest' run
rm_trinucs
Remove trinucleotides in output
Value
A ggplot panel showing MeanDecreaseGini on cytosines and thymines
lindberg-m/contextendR documentation built on Jan. 8, 2022, 3:16 a.m.
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Description Usage Arguments Value
View source: R/kmer_random_forest.R
Description
Create a scatterplot from the results given by 'kmer_random_forest' where x and y axis show the mean decrease in gini for cytosines and thymines respectively, and color indicate the log odds ratio for mutated kmers
Usage
1 | plot_kmer_forest(rf_res, rm_trinucs = FALSE)
|
Arguments
rf_res |
Output from a 'kmer_random_forest' run |
rm_trinucs |
Remove trinucleotides in output |
Value
A ggplot panel showing MeanDecreaseGini on cytosines and thymines
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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