Files in liumoLM/SigQBiC
Signature-QBiC:Predict the effect of mutational signatures on TF binding
.Rbuildignore
.gitignore
Code_for_paper/ExampleOfSignatureQBiC.pdf
Code_for_paper/ExampleofSignatureQBiC.Rmd
Code_for_paper/ExampleofSignatureQBiC.html
Code_for_paper/ExampleofSignatureQBiC.tex
Code_for_paper/png.dir/hist001.png
Code_for_paper/png.dir/hist002.png
Code_for_paper/png.dir/hist003.png
Code_for_paper/png.dir/hist004.png
Code_for_paper/png.dir/hist005.png
Code_for_paper/png.dir/hist006.png
Code_for_paper/png.dir/hist007.png
Code_for_paper/ss.rds
Code_for_paper/test.pdf
DESCRIPTION
NAMESPACE
R/EnrichrPathwayAnalysis.R
R/MutationTypeContribution.R
R/ResampleMutationFrequency.R
R/SignatureQBiC.R
R/TruncatedHist.R
R/data.R
R/sysdata.rda
README.Rmd
README.html
README.md
SigQBiC.Rproj
data-raw/Functions.R
data-raw/GenerateQBiCScoresForTwelvemers.R
data-raw/GenerateSignatureWeightedDistributionPlots.R
data-raw/MutationTypeContribution.R
data-raw/all.possible.twelvemers.rds
data-raw/code for Liu et al cleaned.Rmd
data-raw/code for Liu et al.Rmd
data-raw/internal_data.R
data-raw/prediction6mer.Homo_sapiens!M01252_1.94d!Barrera2016!HOXD13_I322L_R1.txt.gz
data-raw/pval6mer.Homo_sapiens!M01252_1.94d!Barrera2016!HOXD13_I322L_R1.csv.gz
man/EnrichrPathwayAnalysis.Rd
man/Generate96ChannelSpectrumFromTwelvemers.Rd
man/MutationTypeContribution.Rd
man/PyrPenta.Rd
man/ResampleMutationFrequency.Rd
man/SignatureQBiC.Rd
man/TruncatedHist.Rd
tests/testthat.R
tests/testthat/test_SignatureQBiC.R
tests/testthat/testdata/SignatureQBiC.expected.Rdata
tests/testthat/testdata/example_mutation_contribution_to_SBS7a.txt
