Generate96ChannelSpectrumFromTwelvemers: Generate mutation spectrum from twelvemers

In liumoLM/SigQBiC: Signature-QBiC:Predict the effect of mutational signatures on TF binding

Description

This function generates a mutation spectrum of 96 mutation classes (mutations on pyrimidine centered trinucleotide) from a list of twelvemers

Usage

Generate96ChannelSpectrumFromTwelvemers(input.twelvemers.list)

Arguments

twelvemers

A list of twelvemers, with a 11mer centered at the mutation base and 1 mutated base appended

Value

A mutation spectrum with 96 mutation types

liumoLM/SigQBiC documentation built on Feb. 5, 2021, 12:53 a.m.