EnrichrPathwayAnalysis: Identify pathways that enriched with affected TFs by a given...
In liumoLM/SigQBiC: Signature-QBiC:Predict the effect of mutational signatures on TF binding
Description
Usage
Arguments
Value
View source: R/EnrichrPathwayAnalysis.R
Description
A function gives the pathways enriched with affected TFs by a given mutational signature
Usage
1
EnrichrPathwayAnalysis(TF.list, qvalue, dbs.selected)
Arguments
TF.list
A list of affected TFs
qvalue
A numeric of qvalue as filter
dbs.selected
A character of database name in 'enrichR'. In our paper, we used 'Reactome_2016'
Value
A matrix of pathways enriched with given TFs
liumoLM/SigQBiC documentation built on Feb. 5, 2021, 12:53 a.m.
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Description Usage Arguments Value
View source: R/EnrichrPathwayAnalysis.R
Description
A function gives the pathways enriched with affected TFs by a given mutational signature
Usage
1 | EnrichrPathwayAnalysis(TF.list, qvalue, dbs.selected)
|
Arguments
TF.list |
A list of affected TFs |
qvalue |
A numeric of qvalue as filter |
dbs.selected |
A character of database name in 'enrichR'. In our paper, we used 'Reactome_2016' |
Value
A matrix of pathways enriched with given TFs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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