SignatureQBiC: Generate GR and LR for a TF-signature pair (Signature-QBiC)
In liumoLM/SigQBiC: Signature-QBiC:Predict the effect of mutational signatures on TF binding
Description
Usage
Arguments
Value
View source: R/SignatureQBiC.R
Description
SignatureQBiC model. This function generates Gain Ratio and Loss Ratio
for a TF (represented by universal PBM) with
a mutational signature (or a mutation spectrum)
Usage
1
SignatureQBiC(QBiC_score_file_path, pvalue_file_path, sig, plot.path = NULL)
Arguments
QBiC_score_file_path
All QBiC scores for a universal PBM. The file can be downloaded from
http://qbic.genome.duke.edu/downloads
pvalue_file_path
p_values for all twelvemers. The file can be downloaded from
http://qbic.genome.duke.edu/downloads
sig
A one-column matrix contains probability of each mutation types
with row.names set to SigQBiC::mut_types.
Value
A list containing GR and LR.
liumoLM/SigQBiC documentation built on Feb. 5, 2021, 12:53 a.m.
R Package Documentation
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Description Usage Arguments Value
View source: R/SignatureQBiC.R
Description
SignatureQBiC model. This function generates Gain Ratio and Loss Ratio for a TF (represented by universal PBM) with a mutational signature (or a mutation spectrum)
Usage
1 | SignatureQBiC(QBiC_score_file_path, pvalue_file_path, sig, plot.path = NULL)
|
Arguments
QBiC_score_file_path |
All QBiC scores for a universal PBM. The file can be downloaded from http://qbic.genome.duke.edu/downloads |
pvalue_file_path |
p_values for all twelvemers. The file can be downloaded from http://qbic.genome.duke.edu/downloads |
sig |
A one-column matrix contains probability of each mutation types with row.names set to SigQBiC::mut_types. |
Value
A list containing GR and LR.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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