Files in lme4/lme4
Linear Mixed-Effects Models using 'Eigen' and S4

.Rbuildignore
.gitignore
.travis.yml
ChangeLog
DESCRIPTION
Makefile
NAMESPACE
R/AllClass.R R/AllGeneric.R R/GHrule.R R/bootMer.R R/checkConv.R R/deriv.R R/hooks.R R/lmList.R R/lmer.R R/lmerControl.R R/mcmcsamp.R R/modular.R R/nbinom.R R/optimizer.R R/plot.R R/predict.R R/profile.R R/sparsegrid.R
R/sysdata.rda
R/utilities.R R/vcconv.R README.md TODO.md
data/Arabidopsis.rda
data/Dyestuff.rda
data/Dyestuff2.rda
data/InstEval.rda
data/Pastes.rda
data/Penicillin.rda
data/VerbAgg.rda
data/cake.rda
data/cbpp.rda
data/grouseticks.rda
data/sleepstudy.rda
do-roxy
inst/CITATION
inst/NEWS.Rd
inst/doc/Doxyfile
inst/doc/Doxyfile.bak
inst/doc/PLSvGLS.pdf inst/doc/Theory.pdf inst/doc/lme4-extras.pdf inst/doc/lmer.pdf
inst/doc/lmerperf.html
inst/doc/profiling.txt
inst/testdata/Johnson.rda
inst/testdata/SO_sep25.RData
inst/testdata/Thailand.rda
inst/testdata/badprof.rds
inst/testdata/boo01L.RData
inst/testdata/colonizer_rand.rda
inst/testdata/confint_ex.rda
inst/testdata/crabs_randdata00.Rda
inst/testdata/crabs_randdata2.Rda
inst/testdata/culcita_dat.RData
inst/testdata/dat20101314.csv
inst/testdata/dataEx_Glmer.txt
inst/testdata/fakesim.RData
inst/testdata/gopherdat2.RData
inst/testdata/gotway_hessianfly.rda
inst/testdata/hotpower.csv
inst/testdata/koller-data.R inst/testdata/lme-tst-fits.R
inst/testdata/lme-tst-fits.rda
inst/testdata/lme-tst-funs.R
inst/testdata/mastitis.rda
inst/testdata/polytom2.RData
inst/testdata/polytom3.RData
inst/testdata/polytomous_test.RData
inst/testdata/polytomous_vcov_ex.RData
inst/testdata/prLogistic.RData
inst/testdata/radinger_dat.RData
inst/testdata/rankMatrix.rds
inst/testdata/respiratory.RData
inst/testdata/sbTobb.Rdata
inst/testdata/survdat_reduced.Rda
inst/testdata/tprfm1.RData
inst/testdata/trees513.R
inst/testdata/trees513.RData
inst/utils/allFit.R man/Arabidopsis.Rd man/Dyestuff.Rd man/GHrule.Rd man/GQdk.Rd man/InstEval.Rd man/NelderMead-class.Rd man/Nelder_Mead.Rd man/Pastes.Rd man/Penicillin.Rd man/VarCorr.Rd man/VerbAgg.Rd man/bootMer.Rd man/cake.Rd man/cbpp.Rd man/checkConv.Rd man/confint.merMod.Rd man/convergence.Rd man/devcomp.Rd man/devfun2.Rd man/drop1.merMod.Rd man/dummy.Rd man/expandDoubleVerts.Rd man/factorize.Rd man/findbars.Rd man/fixef.Rd man/fortify.Rd man/getME.Rd man/glmFamily-class.Rd man/glmFamily.Rd man/glmer.Rd man/glmer.nb.Rd man/glmerLaplaceHandle.Rd man/golden-class.Rd man/grouseticks.Rd man/hatvalues.merMod.Rd man/isNested.Rd man/isREML.Rd man/lmList.Rd man/lmList4-class.Rd man/lmResp-class.Rd man/lmResp.Rd man/lme4-package.Rd man/lmer.Rd man/lmerControl.Rd man/merMod-class.Rd man/merPredD-class.Rd man/merPredD.Rd man/mkMerMod.Rd man/mkReTrms.Rd man/mkRespMod.Rd man/mkSimulationTemplate.Rd man/mkVarCorr.Rd man/modular.Rd man/ngrps.Rd man/nlformula.Rd man/nlmer.Rd man/nloptwrap.Rd man/nobars.Rd man/plot.merMod.Rd man/plots.thpr.Rd man/predict.merMod.Rd man/profile-methods.Rd man/pvalues.Rd man/ranef.Rd man/rePos-class.Rd man/rePos.Rd man/refit.Rd man/refitML.Rd man/residuals.merMod.Rd man/sigma.Rd man/simulate.merMod.Rd man/sleepstudy.Rd man/subbars.Rd man/troubleshooting.Rd man/utilities.Rd man/vcconv.Rd
misc/Done
misc/GH_425.R
misc/cache/__packages
misc/cache/buildpkg_ef639b7437c856b62a405d4bf7cec7fd.RData
misc/cache/buildpkg_ef639b7437c856b62a405d4bf7cec7fd.rdb
misc/cache/buildpkg_ef639b7437c856b62a405d4bf7cec7fd.rdx
misc/cache/getCRANtimes_c3686613f1274313805d459214acbb8f.RData
misc/cache/getCRANtimes_c3686613f1274313805d459214acbb8f.rdb
misc/cache/getCRANtimes_c3686613f1274313805d459214acbb8f.rdx
misc/cache/getmedpkg_aa71765d8aedb8d6cb8fbacc16830e3e.RData
misc/cache/getmedpkg_aa71765d8aedb8d6cb8fbacc16830e3e.rdb
misc/cache/getmedpkg_aa71765d8aedb8d6cb8fbacc16830e3e.rdx
misc/cache/medpkgtime_7eacf1a5017a90996110563c28afe8c7.RData
misc/cache/medpkgtime_7eacf1a5017a90996110563c28afe8c7.rdb
misc/cache/medpkgtime_7eacf1a5017a90996110563c28afe8c7.rdx
misc/cache/timecal_e786ac690ec60ab22cbc284cb1045812.RData
misc/cache/timecal_e786ac690ec60ab22cbc284cb1045812.rdb
misc/cache/timecal_e786ac690ec60ab22cbc284cb1045812.rdx
misc/cache/timecheck_81f5aa89c9c5d3344fccb5ddc7ddca45.RData
misc/cache/timecheck_81f5aa89c9c5d3344fccb5ddc7ddca45.rdb
misc/cache/timecheck_81f5aa89c9c5d3344fccb5ddc7ddca45.rdx
misc/cache/timeinstall_7fd5adba719d64adf8f19741517f6fda.RData
misc/cache/timeinstall_7fd5adba719d64adf8f19741517f6fda.rdb
misc/cache/timeinstall_7fd5adba719d64adf8f19741517f6fda.rdx
misc/cache/timetests_0eb1bec346e325d61021cc51aa702920.RData
misc/cache/timetests_0eb1bec346e325d61021cc51aa702920.rdb
misc/cache/timetests_0eb1bec346e325d61021cc51aa702920.rdx
misc/cp_vignette.R misc/gammaClamp.R misc/issues/211-dev-weights.R misc/issues/287-glmer.nb.R misc/issues/303-predict-miss-levels.R misc/issues/318-glmer.nb.R
misc/issues/Bachl_data.RData
misc/issues/Bachl_issue130.R misc/issues/Banta_conv.Rmd misc/issues/GH386.R misc/issues/GH_303.R misc/issues/GH_316.rmd misc/issues/OddSets.R
misc/issues/OddSets1.Rdata
misc/issues/VA.RData
misc/issues/VerbAgg.R misc/issues/Xrank_168.R misc/issues/condVar.R misc/issues/conv_dmartin.R misc/issues/conv_simfuns.R misc/issues/convdat.R
misc/issues/convergence.html
misc/issues/convergence.rmd
misc/issues/dialectNL.rda
misc/issues/dialectNL2.rda
misc/issues/dynload.R
misc/issues/fit+pr_AV3.rda
misc/issues/glmernb_foraging.R
misc/issues/glmernb_foraging_models.rda
misc/issues/glmernb_foraging_subset.csv
misc/issues/glmmvcov_v3.R
misc/issues/lme4_knitr_conv2.html
misc/issues/lme4_knitr_conv2.rmd misc/issues/lme4_order.Rmd misc/issues/nbinom_refit.R
misc/issues/offset_test.rds
misc/issues/penicillin_conv.R
misc/issues/penicillin_conv.RData
misc/issues/penicillin_conv.pdf misc/issues/polytom.R misc/issues/polytomous_2014mar.R
misc/issues/polytomous_test.RData
misc/issues/rank-32bit-stla-ex.R misc/issues/refit_vs_fit.R misc/issues/schizo.R misc/issues/wieling_batch1.R
misc/issues/wieling_batch1.RData
misc/issues/wieling_batch1.html
misc/issues/wieling_batch2.R misc/issues/wieling_batchfuns.R
misc/issues/wieling_results.csv
misc/logLikGLMM/logLikGLMM.R misc/notes/deviance.rmd misc/notes/eval_levels.rmd misc/notes/interface.md misc/notes/laplDiag.Rmd
misc/notes/laplDiag.html
misc/notes/laplDiag.md misc/notes/lme4_status.md
misc/notes/mixed_interface.html
misc/notes/mixed_interface.rmd misc/notes/options.md misc/notes/release_notes.md misc/notes/release_notes.rmd
misc/notes/toenail.csv
misc/oldcode/jml.R misc/oldcode/mlirt.R misc/pkgtests/README.md
misc/pkgtests/lme4_compat_report.html
misc/pkgtests/lme4_notes.csv
misc/pkgtests/pkgdepfuns.R misc/pkgtests/pkgdeptests.R
misc/pkgtests/runCheck
misc/pkgtests/setTestEnv
misc/pkgtests/unsetTestEnv
misc/ranefIndex.R
misc/test_timings.Rnw
misc/test_timings.pdf
src/Makevars
src/Makevars.win
src/external.cpp
src/glmFamily.cpp
src/glmFamily.h
src/lme4CholmodDecomposition.h
src/mcmcsamp.cpp
src/mcmcsamp.h
src/optimizer.cpp
src/optimizer.h
src/predModule.cpp
src/predModule.h
src/respModule.cpp
src/respModule.h
tests/AAAtest-all.R tests/HSAURtrees.R
tests/README
tests/README.md tests/REMLdev.R tests/ST.R tests/agridat_gotway.R tests/bootMer.R tests/boundary.R tests/confint.R tests/devCritFun.R tests/drop.R tests/drop1contrasts.R tests/dynload.R tests/elston.R tests/evalCall.R tests/extras.R tests/falsezero_dorie.R tests/fewlevels.R tests/getME.R tests/glmer-1.R tests/glmerControlPass.R tests/glmerWarn.R tests/glmmExt.R tests/glmmWeights.R tests/hatvalues.R tests/is.R tests/lmList-tst.R tests/lme4_nlme.R tests/lmer-0.R tests/lmer-1.R
tests/lmer-1.Rout.save
tests/lmer-conv.R tests/lmer2_ex.R tests/methods.R tests/minval.R tests/modFormula.R tests/nbinom.R tests/nlmer-conv.R tests/nlmer.R
tests/nlmer.Rout.save
tests/offset.R tests/optimizer.R tests/polytomous.R tests/prLogistic.R tests/predict_basis.R tests/predsim.R tests/priorWeights.R tests/priorWeightsModComp.R tests/profile-tst.R tests/refit.R tests/resids.R tests/respiratory.R tests/simulate.R tests/testOptControl.R tests/testcolonizer.R tests/testcrab.R tests/testthat/test-NAhandling.R tests/testthat/test-catch.R tests/testthat/test-doubleVertNotation.R tests/testthat/test-factors.R tests/testthat/test-formulaEval.R tests/testthat/test-glmFamily.R tests/testthat/test-glmer.R tests/testthat/test-glmernb.R tests/testthat/test-glmmFail.R tests/testthat/test-lmList.R tests/testthat/test-lmer.R tests/testthat/test-lmerResp.R tests/testthat/test-methods.R tests/testthat/test-nbinom.R tests/testthat/test-nlmer.R tests/testthat/test-oldRZXfailure.R tests/testthat/test-predict.R tests/testthat/test-ranef.R tests/testthat/test-rank.R tests/testthat/test-resids.R tests/testthat/test-start.R tests/testthat/test-stepHalving.R tests/testthat/test-summary.R tests/testthat/test-utils.R tests/throw.R tests/varcorr.R tests/vcov-etc.R testsx/identZ.R
testsx/randcrabdata.RData
vignettes/PLSvGLS.Rnw
vignettes/Theory.Rnw
vignettes/lme4.bib
vignettes/lmer.Rnw
vignettes/lmer.bib
vignettes/lmerperf.Rmd
lme4/lme4 documentation built on Oct. 12, 2018, 10:24 p.m.