Files in longjess/hornsharkHMM

Functions For Analysing Horn Shark Data Using Hidden Markov Models

LICENSE.md R/RcppExports.R R/exploring_lab_data.R R/exploring_lab_data_dynamic.R R/exploring_lab_data_log_odba.R R/exploring_lab_data_log_sd.R R/exploring_lab_data_means.R R/exploring_lab_data_sd.R R/exploring_lab_data_static.R R/graph_hmm.R R/import.R R/indep_multivariate_autoregressive_hmm_functions.R R/indep_multivariate_normal_hmm_functions.R R/misc.R R/multivariate_autoregressive_hmm_functions.R R/multivariate_normal_hmm_functions.R R/univariate_autoregressive_hmm_functions.R R/univariate_normal_hmm_functions.R README.md man/acf_plot_dynamic.Rd man/acf_plot_log_odba.Rd man/acf_plot_static.Rd man/ar_bootstrap_ci.Rd man/ar_bootstrap_estimates.Rd man/ar_densities.Rd man/ar_densities_labelled.Rd man/ar_hmm_generate_sample.Rd man/ar_hmm_lbackward.Rd man/ar_hmm_lforward.Rd man/ar_hmm_mle.Rd man/ar_hmm_mllk.Rd man/ar_hmm_pn2pw.Rd man/ar_hmm_pseudo_residuals.Rd man/ar_hmm_pw2pn.Rd man/ar_hmm_viterbi.Rd man/ar_inv_hessian.Rd man/ar_jacobian.Rd man/behavior_hist_dynamic.Rd man/behavior_hist_log_odba.Rd man/behavior_hist_static.Rd man/behavior_pairs_plot_dynamic.Rd man/behavior_pairs_plot_static.Rd man/behavior_plot_dynamic.Rd man/behavior_plot_log_odba.Rd man/behavior_plot_static.Rd man/diag_exp.Rd man/diag_log_lower.Rd man/filtered_hist_dynamic.Rd man/filtered_hist_log_odba.Rd man/filtered_hist_static.Rd man/get_all_ar_means.Rd man/get_all_inmar_means.Rd man/get_all_log_sd_data.Rd man/get_all_mar_means.Rd man/get_all_mean_data.Rd man/get_all_sd_data.Rd man/get_ar_mean.Rd man/get_custom_data.Rd man/get_dynamic_log_sd_data.Rd man/get_dynamic_log_sd_plots.Rd man/get_dynamic_mean_data.Rd man/get_dynamic_mean_plots.Rd man/get_dynamic_sd_data.Rd man/get_dynamic_sd_plots.Rd man/get_inmar_mean.Rd man/get_log_odba_mean_plots.Rd man/get_mar_mean.Rd man/get_plots_dynamic.Rd man/get_plots_log_odba.Rd man/get_plots_static.Rd man/get_static_log_sd_data.Rd man/get_static_log_sd_plots.Rd man/get_static_mean_data.Rd man/get_static_mean_plots.Rd man/get_static_sd_data.Rd man/get_static_sd_plots.Rd man/graph_hmm_hist.Rd man/graph_hmm_output.Rd man/hist_plot_dynamic.Rd man/hist_plot_log_odba.Rd man/hist_plot_static.Rd man/inmar_bootstrap_ci.Rd man/inmar_bootstrap_estimates.Rd man/inmar_densities.Rd man/inmar_densities_labelled.Rd man/inmar_dist_mat.Rd man/inmar_hmm_generate_sample.Rd man/inmar_hmm_lbackward.Rd man/inmar_hmm_lforward.Rd man/inmar_hmm_mle.Rd man/inmar_hmm_mllk.Rd man/inmar_hmm_pn2pw.Rd man/inmar_hmm_pseudo_residuals.Rd man/inmar_hmm_pw2pn.Rd man/inmar_hmm_viterbi.Rd man/inmar_inv_hessian.Rd man/inmar_jacobian.Rd man/inmvnorm_bootstrap_ci.Rd man/inmvnorm_bootstrap_estimates.Rd man/inmvnorm_densities.Rd man/inmvnorm_densities_labelled.Rd man/inmvnorm_dist_mat.Rd man/inmvnorm_hmm_generate_sample.Rd man/inmvnorm_hmm_lbackward.Rd man/inmvnorm_hmm_lforward.Rd man/inmvnorm_hmm_mle.Rd man/inmvnorm_hmm_mllk.Rd man/inmvnorm_hmm_pn2pw.Rd man/inmvnorm_hmm_pseudo_residuals.Rd man/inmvnorm_hmm_pw2pn.Rd man/inmvnorm_hmm_sample_one.Rd man/inmvnorm_hmm_viterbi.Rd man/inmvnorm_inv_hessian.Rd man/inmvnorm_jacobian.Rd man/line_plot_dynamic.Rd man/line_plot_log_odba.Rd man/line_plot_static.Rd man/mar_bootstrap_ci.Rd man/mar_bootstrap_estimates.Rd man/mar_densities.Rd man/mar_dist_mat.Rd man/mar_hmm_generate_sample.Rd man/mar_hmm_lbackward.Rd man/mar_hmm_lforward.Rd man/mar_hmm_mle.Rd man/mar_hmm_mllk.Rd man/mar_hmm_pn2pw.Rd man/mar_hmm_pseudo_residuals.Rd man/mar_hmm_pw2pn.Rd man/mar_hmm_viterbi.Rd man/mar_inv_hessian.Rd man/mar_jacobian.Rd man/mvnorm_bootstrap_ci.Rd man/mvnorm_bootstrap_estimates.Rd man/mvnorm_densities.Rd man/mvnorm_dist_mat.Rd man/mvnorm_hmm_generate_sample.Rd man/mvnorm_hmm_lbackward.Rd man/mvnorm_hmm_lforward.Rd man/mvnorm_hmm_mle.Rd man/mvnorm_hmm_mllk.Rd man/mvnorm_hmm_pn2pw.Rd man/mvnorm_hmm_pseudo_residuals.Rd man/mvnorm_hmm_pw2pn.Rd man/mvnorm_hmm_sample_one.Rd man/mvnorm_hmm_viterbi.Rd man/mvnorm_inv_hessian.Rd man/mvnorm_jacobian.Rd man/norm_bootstrap_ci.Rd man/norm_bootstrap_covariance.Rd man/norm_bootstrap_estimates.Rd man/norm_densities.Rd man/norm_hmm_generate_sample.Rd man/norm_hmm_lbackward.Rd man/norm_hmm_lforward.Rd man/norm_hmm_mle.Rd man/norm_hmm_mllk.Rd man/norm_hmm_pn2pw.Rd man/norm_hmm_pseudo_residuals.Rd man/norm_hmm_pw2pn.Rd man/norm_hmm_viterbi.Rd man/norm_inv_hessian.Rd man/norm_jacobian.Rd man/norm_marginal.Rd man/pacf_plot_dynamic.Rd man/pacf_plot_log_odba.Rd man/pacf_plot_static.Rd man/pairs_plot.Rd man/pseudo_residual_plot.Rd man/triangular_num.Rd