exec/global_cor_heatmap_example.R

In loosolab/wilson: Web-Based Interactive Omics Visualization

library(shiny)
library(shinydashboard)
source("../R/function.R")
source("../R/colorPicker.R")
source("../R/columnSelector.R")
source("../R/transformation.R")
source("../R/global_cor_heatmap.R")
source("../R/limit.R")
source("../R/global.R")
source("../R/clarion.R")

# test data
data <- data.table::as.data.table(mtcars, keep.rowname = "id")
# create metadata
metadata <- data.table::data.table(names(data), level = c("feature", rep("sample", 7), rep("condition", 4)))
names(metadata)[1] <- "key"
clarion <- Clarion$new(data = data, metadata = metadata)
#####

ui <- dashboardPage(
  header = dashboardHeader(),
  sidebar = dashboardSidebar(
    numericInput(inputId = "width", label = "width in cm", value = 0, min = 0),
    numericInput(inputId = "height", label = "height in cm", value = 0, min = 0),
    sliderInput(inputId = "scale", label = "scale plot", value = 1, min = 1, max = 10)
  ),
  dashboardBody(
    fluidPage(
      global_cor_heatmapUI("id")
    )
  )
)

server <- function(input, output) {
  table <- shiny::callModule(global_cor_heatmap, "id", clarion = clarion, plot.method = "static", width = reactive(input$width), height = reactive(input$height), scale = reactive(input$scale))

  shiny::observe({
    print(table())
  })
}

shinyApp(ui = ui, server = server)