Files in lrutter/bigPint
Big multivariate data plotted interactively

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
NEWS.md R/bigPint.R R/data-soybean_cn.R R/data-soybean_cn_metrics.R R/data-soybean_cn_sub.R R/data-soybean_cn_sub_metrics.R R/data-soybean_ir.R R/data-soybean_ir_metrics.R R/data-soybean_ir_sub.R R/data-soybean_ir_sub_metrics.R R/helperCadFALSE.R R/helperCadTRUE.R R/helperMakeHex.R R/helperMakeHexDF.R R/helperMakePairs.R R/helperSMFC.R R/helperSMHex.R R/helperSMOrth.R R/helperSMPoints.R R/helperSMPrint.R R/helperTestData.R R/helperTestDataMetrics.R R/helperTestDataMetricsLitreApp.R R/helperTestDataMetricsVolcano.R R/helperTestDataMetricsVolcanoApp.R R/plotClusters.R R/plotLitre.R R/plotLitreApp.R R/plotPCP.R R/plotPCPApp.R R/plotSM.R R/plotSMApp.R R/plotVolcano.R R/plotVolcanoApp.R README.Rmd README.md
_pkgdown.yml
data/datalist
data/soybean_cn.rda
data/soybean_cn_metrics.rda
data/soybean_cn_sub.rda
data/soybean_cn_sub_metrics.rda
data/soybean_ir.rda
data/soybean_ir_metrics.rda
data/soybean_ir_sub.rda
data/soybean_ir_sub_metrics.rda
docs/articles/bioconductor.html
docs/articles/clusters.html
docs/articles/clusters_files/figure-html/unnamed-chunk-10-1.png
docs/articles/clusters_files/figure-html/unnamed-chunk-2-1.png
docs/articles/clusters_files/figure-html/unnamed-chunk-3-1.png
docs/articles/clusters_files/figure-html/unnamed-chunk-4-1.png
docs/articles/clusters_files/figure-html/unnamed-chunk-5-1.png
docs/articles/clusters_files/figure-html/unnamed-chunk-5-2.png
docs/articles/createDataMetrics.html
docs/articles/data.html
docs/articles/dataMetrics.html
docs/articles/index.html
docs/articles/installation.html
docs/articles/interactive.html
docs/articles/pipeline.html
docs/articles/pipeline_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/pipeline_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/pipeline_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/pipeline_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/pipeline_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/pipeline_files/figure-html/unnamed-chunk-10-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-13-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-19-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-20-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-21-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-22-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-23-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-24-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-25-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-26-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-29-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-5-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-6-1.png
docs/articles/pipeline_files/figure-html/unnamed-chunk-7-1.png
docs/articles/pipeline_files/htmlwidgets-1.3/htmlwidgets.js
docs/articles/pipeline_files/jquery-1.11.3/jquery-AUTHORS.txt
docs/articles/pipeline_files/jquery-1.11.3/jquery.js
docs/articles/pipeline_files/jquery-1.11.3/jquery.min.js
docs/articles/pipeline_files/jquery-1.11.3/jquery.min.map
docs/articles/pipeline_files/plotly-binding-4.8.0/plotly.js
docs/articles/pipeline_files/plotly-htmlwidgets-css-1.39.2/plotly-htmlwidgets.css
docs/articles/pipeline_files/plotly-main-1.39.2/plotly-latest.min.js
docs/articles/pipeline_files/typedarray-0.1/typedarray.min.js
docs/articles/plotIntro.html
docs/articles/plotIntro_files/figure-html/unnamed-chunk-1-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-10-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-2-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-3-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-4-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-5-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-6-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-7-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-8-1.png
docs/articles/plotIntro_files/figure-html/unnamed-chunk-9-1.png
docs/articles/static.html
docs/articles/static_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/static_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/static_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/static_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/static_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/static_files/figure-html/unnamed-chunk-10-1.png
docs/articles/static_files/figure-html/unnamed-chunk-10-2.png
docs/articles/static_files/figure-html/unnamed-chunk-10-3.png
docs/articles/static_files/figure-html/unnamed-chunk-11-1.png
docs/articles/static_files/figure-html/unnamed-chunk-12-1.png
docs/articles/static_files/figure-html/unnamed-chunk-13-1.png
docs/articles/static_files/figure-html/unnamed-chunk-14-1.png
docs/articles/static_files/figure-html/unnamed-chunk-15-1.png
docs/articles/static_files/figure-html/unnamed-chunk-16-1.png
docs/articles/static_files/figure-html/unnamed-chunk-17-1.png
docs/articles/static_files/figure-html/unnamed-chunk-18-1.png
docs/articles/static_files/figure-html/unnamed-chunk-19-1.png
docs/articles/static_files/figure-html/unnamed-chunk-21-1.png
docs/articles/static_files/figure-html/unnamed-chunk-22-1.png
docs/articles/static_files/figure-html/unnamed-chunk-23-1.png
docs/articles/static_files/figure-html/unnamed-chunk-24-1.png
docs/articles/static_files/figure-html/unnamed-chunk-6-1.png
docs/articles/static_files/figure-html/unnamed-chunk-7-1.png
docs/articles/static_files/htmlwidgets-1.3/htmlwidgets.js
docs/articles/static_files/jquery-1.11.3/jquery-AUTHORS.txt
docs/articles/static_files/jquery-1.11.3/jquery.js
docs/articles/static_files/jquery-1.11.3/jquery.min.js
docs/articles/static_files/jquery-1.11.3/jquery.min.map
docs/articles/static_files/plotly-binding-4.8.0/plotly.js
docs/articles/static_files/plotly-htmlwidgets-css-1.39.2/plotly-htmlwidgets.css
docs/articles/static_files/plotly-main-1.39.2/plotly-latest.min.js
docs/articles/static_files/typedarray-0.1/typedarray.min.js
docs/articles/superimposeData.html
docs/articles/superimposeData_files/figure-html/unnamed-chunk-1-1.png
docs/articles/superimposeData_files/figure-html/unnamed-chunk-2-1.png
docs/articles/superimposeData_files/figure-html/unnamed-chunk-3-1.png
docs/articles/superimposeData_files/figure-html/unnamed-chunk-4-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/docsearch.json
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/N_P_Glyma.05G188700.Wm82.a2.v1_litre.jpg
docs/reference/N_P_Glyma.11G141800.Wm82.a2.v1_litre.jpg
docs/reference/N_P_Glyma.13G173100.Wm82.a2.v1_litre.jpg
docs/reference/N_P_Glyma.13G293500.Wm82.a2.v1_litre.jpg
docs/reference/N_P_Glyma.19G168700.Wm82.a2.v1_litre.jpg
docs/reference/bigPint.html
docs/reference/figures/lkClusters.png
docs/reference/figures/lkSM2.png
docs/reference/figures/logo.png
docs/reference/figures/sbIRStreak2.png
docs/reference/figures/yeastWithinBetween.png
docs/reference/index.html
docs/reference/plotClusters-1.png
docs/reference/plotClusters-2.png
docs/reference/plotClusters-3.png
docs/reference/plotClusters-4.png
docs/reference/plotClusters-5.png
docs/reference/plotClusters.html
docs/reference/plotLitre-1.png
docs/reference/plotLitre-2.png
docs/reference/plotLitre-3.png
docs/reference/plotLitre.html
docs/reference/plotLitreApp.html
docs/reference/plotPCP-1.png
docs/reference/plotPCP-2.png
docs/reference/plotPCP-3.png
docs/reference/plotPCP.html
docs/reference/plotPCPApp.html
docs/reference/plotSM-1.png
docs/reference/plotSM-2.png
docs/reference/plotSM-3.png
docs/reference/plotSM-4.png
docs/reference/plotSM-5.png
docs/reference/plotSM-6.png
docs/reference/plotSM-7.png
docs/reference/plotSM-8.png
docs/reference/plotSM.html
docs/reference/plotSMApp.html
docs/reference/plotVolcano-1.png
docs/reference/plotVolcano-2.png
docs/reference/plotVolcano-3.png
docs/reference/plotVolcano.html
docs/reference/plotVolcanoApp.html
docs/reference/soybean_cn.html
docs/reference/soybean_cn_metrics.html
docs/reference/soybean_cn_sub.html
docs/reference/soybean_cn_sub_metrics.html
docs/reference/soybean_ir.html
docs/reference/soybean_ir_metrics.html
docs/reference/soybean_ir_sub.html
docs/reference/soybean_ir_sub_metrics.html
docs/sitemap.xml
inst/.DS_Store~
inst/shiny-dashboards/litre/app.R
inst/shiny-dashboards/litre/rsconnect/shinyapps.io/bigpint/litre.dcf
inst/shiny-dashboards/litre/soybean_ir_sub.rda
inst/shiny-dashboards/litre/soybean_ir_sub_metrics.rda
inst/shiny-dashboards/litre/www/Figure1.png
inst/shiny-dashboards/litre/www/Figure2.png
inst/shiny-dashboards/litre/www/Figure3.png
inst/shiny-dashboards/litre/www/Figure4.png
inst/shiny-dashboards/pcplot/app.R
inst/shiny-dashboards/pcplot/rsconnect/shinyapps.io/bigpint/pcplot.dcf
inst/shiny-dashboards/pcplot/soybean_ir_sub.rda
inst/shiny-dashboards/pcplot/soybean_ir_sub_metrics.rda
inst/shiny-dashboards/pcplot/www/.DS_Store~
inst/shiny-dashboards/pcplot/www/Figure1.png
inst/shiny-dashboards/pcplot/www/Figure2.png
inst/shiny-dashboards/pcplot/www/Figure3.png
inst/shiny-dashboards/pcplot/www/Figure4.png
inst/shiny-dashboards/smplot/rsconnect/shinyapps.io/bigpint/smplot.dcf
inst/shiny-dashboards/smplot/server.R
inst/shiny-dashboards/smplot/soybean_cn_sub.rda
inst/shiny-dashboards/smplot/ui.R
inst/shiny-dashboards/smplot/www/.DS_Store~
inst/shiny-dashboards/smplot/www/Figure1.png
inst/shiny-dashboards/smplot/www/Figure2.png
inst/shiny-dashboards/smplot/www/Figure3.png
inst/shiny-dashboards/smplot/www/Figure4.png
inst/shiny-dashboards/volcano/app.R
inst/shiny-dashboards/volcano/rsconnect/shinyapps.io/bigpint/volcano.dcf
inst/shiny-dashboards/volcano/soybean_ir_sub.rda
inst/shiny-dashboards/volcano/soybean_ir_sub_metrics.rda
inst/shiny-dashboards/volcano/www/.DS_Store~
inst/shiny-dashboards/volcano/www/Figure1.png
inst/shiny-dashboards/volcano/www/Figure2.png
inst/shiny-dashboards/volcano/www/Figure3.png
inst/shiny-dashboards/volcano/www/Figure4.png
inst/shiny-examples/.DS_Store~
inst/shiny-examples/plotLitreApp/.DS_Store~
inst/shiny-examples/plotLitreApp/app.R
inst/shiny-examples/plotLitreApp/www/.DS_Store~
inst/shiny-examples/plotLitreApp/www/Figure1.png
inst/shiny-examples/plotLitreApp/www/Figure2.png
inst/shiny-examples/plotLitreApp/www/Figure3.png
inst/shiny-examples/plotLitreApp/www/Figure4.png
inst/shiny-examples/plotPCPApp/.DS_Store~
inst/shiny-examples/plotPCPApp/app.R
inst/shiny-examples/plotPCPApp/www/.DS_Store~
inst/shiny-examples/plotPCPApp/www/Figure1.png
inst/shiny-examples/plotPCPApp/www/Figure2.png
inst/shiny-examples/plotPCPApp/www/Figure3.png
inst/shiny-examples/plotPCPApp/www/Figure4.png
inst/shiny-examples/plotSMApp/.DS_Store~
inst/shiny-examples/plotSMApp/manifest.json
inst/shiny-examples/plotSMApp/server.R inst/shiny-examples/plotSMApp/ui.R
inst/shiny-examples/plotSMApp/www/.DS_Store~
inst/shiny-examples/plotSMApp/www/Figure1.png
inst/shiny-examples/plotSMApp/www/Figure2.png
inst/shiny-examples/plotSMApp/www/Figure3.png
inst/shiny-examples/plotSMApp/www/Figure4.png
inst/shiny-examples/plotVolcanoApp/.DS_Store~
inst/shiny-examples/plotVolcanoApp/app.R
inst/shiny-examples/plotVolcanoApp/www/.DS_Store~
inst/shiny-examples/plotVolcanoApp/www/Figure1.png
inst/shiny-examples/plotVolcanoApp/www/Figure2.png
inst/shiny-examples/plotVolcanoApp/www/Figure3.png
inst/shiny-examples/plotVolcanoApp/www/Figure4.png
inst/unitTests/test_data.R inst/unitTests/test_dataMetrics.R inst/unitTests/test_dataMetricsLitreApp.R inst/unitTests/test_dataMetricsVolcano.R inst/unitTests/test_dataMetricsVolcanoApp.R man/bigPint.Rd
man/figures/lkClusters.png
man/figures/lkSM2.png
man/figures/logo.png
man/figures/sbIRStreak2.png
man/figures/yeastWithinBetween.png
man/plotClusters.Rd man/plotLitre.Rd man/plotLitreApp.Rd man/plotPCP.Rd man/plotPCPApp.Rd man/plotSM.Rd man/plotSMApp.Rd man/plotVolcano.Rd man/plotVolcanoApp.Rd man/soybean_cn.Rd man/soybean_cn_metrics.Rd man/soybean_cn_sub.Rd man/soybean_cn_sub_metrics.Rd man/soybean_ir.Rd man/soybean_ir_metrics.Rd man/soybean_ir_sub.Rd man/soybean_ir_sub_metrics.Rd tests/runTests.R
vignettes/bigPint.bib
vignettes/bioconductor.Rmd vignettes/clusters.Rmd vignettes/createDataMetrics.Rmd vignettes/data.Rmd vignettes/dataMetrics.Rmd vignettes/installation.Rmd vignettes/interactive.Rmd vignettes/pipeline.Rmd vignettes/plotIntro.Rmd vignettes/static.Rmd vignettes/superimposeData.Rmd
lrutter/bigPint documentation built on Jan. 2, 2019, 8:36 p.m.