R/data-soybean_ir_sub.R

In lrutter/bigPint: BIG multivariate data Plotted INTeractively

#' Raw and subsetted soybean leaves data
#'
#' @name soybean_ir_sub
#' @title Raw and subsetted soybean leaves iron-metabolism data
#' @description This dataset contains raw RNA-sequencing read counts from a 
#' soybean dataset that compared leaves that were exposed to iron-rich (iron
#' -postive) soil conditions versus leaves that were exposed to iron-poor 
#' (iron-negative) soil conditions. The data was collected 120 minutes after 
#' iron conditions were initiated. To save on size, this example dataset was 
#' generated by obtaining a random subset of 1 out of 10 genes from the 
#' original resource.
#' @docType data
#' @format a \code{RData} instance, 1 row per gene
#' @details \itemize{
    #' \item ID gene name
    #' \item N.1 iron-negative condition replicate 1 raw read counts
    #' \item N.2 iron-negative condition replicate 2 raw read counts
    #' \item N.3 iron-negative condition replicate 3 raw read counts
    #' \item P.1 iron-positive condition replicate 1 raw read counts
    #' \item P.2 iron-positive condition replicate 2 raw read counts
    #' \item P.3 iron-positive condition replicate 3 raw read counts
    #' }
#' @docType data
#' @keywords datasets
#' @usage data(soybean_ir_sub)
#' @format A data frame with 5,604 rows and 7 variables
#' @seealso \code{\link{soybean_ir}} from which this dataset is subsetted
#' @references
#' Moran Lauter AN, Graham MA. NCBI SRA bioproject accession: PRJNA318409.
#' 
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