sendxy: INTERACTIVE SCATTERPLOT- DEPRECATED

Description Usage Arguments Details Value Note Author(s) References See Also Examples

View source: R/sendxy.R

Description

This function is a wrapper to sendplot that will create a single interactive scatterplot

Usage

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sendxy(plot.call,
       x, y, 
       xy.lbls = NA, x.lbls = NA,y.lbls=NA,
       x.links=NA, y.links=NA,
       xy.links=NA,asLinks=NA,
       xlim = NA, ylim = NA,
       mai=NA, mai.prc=FALSE,plt.extras=NA,
       bound.pt=FALSE, source.plot=NA,
       paint=FALSE,img.prog = NA,
       resize="800x1100",
       ps.paper="letter",ps.width=8,ps.height=11,
       fname.root="test",dir="./",header="v2",
       up.left=c(205,131),low.right=c(633,883),
       spot.radius=5, automap=FALSE, automap.method="mode")
 

Arguments

plot.call

character vector containing single plot call

x

vector of x locations for interactive points

y

vector of y locations for interactive points

xy.lbls

data frame of n x m which contatins values relating to the x axis of the plot call. n should be the length of the x argument. m columns contains information regarding sample. This information is displayed in the interactive plot window

x.lbls

data frame of n x m which contains values relating to the x axis of the plot call. n should be the length of the x argument. m columns contains information regarding sample. This information is displayed in the interactive plot window

y.lbls

data frame of n x m which contains values relating to the y axis of the plot. n should be the length of the y argument. m columns contains information regarding sample. This information is displayed in the interactive plot window

x.links

data frame of n x m which contains web addresses for links relating to the x axis of the first plot. n should be the length of the x argument. m columns contains information regarding sample. This information is displayed as hyperlinks in the interactive plot window.

y.links

data frame of n x m which contains web addresses for links relating to the y axis of the first plot. n should be the length of the y argument. m columns contains information regarding sample. This information is displayed as hyperlinks in the interactive plot window.

xy.links

list of matricies. All matricies should be of n x m where n is the length of y and m is the length of x. This information is displayed in the interactive plot window as hyperlinks. The values in these matricies should be complete web address

asLinks

contains complete web address for points that should be treated as hyperlinks. May be a data.frame or matrix of n x m where n is the length of y and m is the length of x, a vector of length x indicating x specific links that will be repeated, a vector of length y indicating y specific links that will be repeated, a non NA value of length 1 that will be repeated for all points, or a vector of length x*y

xlim

xlim values for the plot. If left as NA, the range of x will be used.

ylim

ylim values for the plot. If left as NA, the range of y will be used.

mai

margins for each side of the plot.If NA uses default margins

mai.prc

logical indicating if mai mat values are percentages or hard coded values. If mai.proc is T, indicates percentage.

plt.extras

List of additional plotting calls that should be executed for the plot.

bound.pt

logical indicating if red points should be plotted to aid in finding the upper left and lower right coordinates. If bound.pt is FALSE, indicates that up.left and low.right arguments are correct and will make the html file

source.plot

Indicates whether application should make a postscript file and then convert to png file, or if the png file should be made directly. This value is either ps, png, or NA. If NA the operating system is checked and the appropraite file format is output. Unix has a convert function that can convert a ps file to png file; we by default use this setup because we feel the postscript file maintains better quality. So on unix/linux systems if source.plot is NA, source.plot will be set to ps. Windows does not have this option, for this reason source.plot will be set to png if left NA

paint

logical indicating if application should automatically open .png file for the user to view .png file and/or to retrieve needed bounding values of the plot call.

img.prog

If paint is TRUE, the command line call that will open a program to view .png file to retrieve pixil locations of interactive plot bounds. If this is left NA, the operating system is checked and a default program is used. For unix the default application is kolourpaint and for windows it is microsoft paint (mspaint)

resize

character indicating resize value. The postscript version will be resized to this value when converted to .png.

ps.paper

postscript paper argument

ps.width

poscript width argument

ps.height

postscript height argument

fname.root

Base name to use for posctscript, .png, and html file names.

dir

directory path to where files should be created

up.left

The x and y value in pixels of the upper left hand corner of the plot call

header

May either be v1 or v2. This determines which tooltip header will be in the html file. Each version has different features or works well with different web browsers. see sp.header for details.

low.right

The x and y value in pixels of the lower right hand corner of the plot call.

spot.radius

radius of circle in pixels indicating area that will be interactive around the center of interactive points

automap

automatic detection of up.left and low.right bound points. Fully functional on linux/unix machines only.

automap.method

Method to detect upper and lower bounds. Current options are mode or median

Details

This function is a wrapper for the sendplot function to create a single interacive scatterplot. See sendplot for more information.

Users are encouraged to read the package vignette which includes a detailed discussion of all function arguments as well as several useful examples.

Value

Creates a static .ps and .png file, and an interactive html file

Note

The interactive html plot currently only works in web browsers that implement java script.

The code used to create the javascript embedded in html file is a modified version of the javascript code or from the open source tooltip library. see reference links

This function is deprecated. Please see xy.send for updated version.

Author(s)

Lori A. Shepherd, Daniel P. Gaile

References

http://www.onlamp.com/pub/a/onlamp/2007/07/05/writing-advanced-javascript.html

http://www.walterzorn.com/tooltip/tooltip\_e.htm

See Also

initSplot, makeImap, makeSplot, xy.send, imagesend, heatmap.send

Examples

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# load the library
  library("sendplot")

# create some vectors of points
   x1 = 1:7
   y1 = 1:7  
   x2 = 7:1
   y2 = rep(4,7)
# create master vector of all points
   x = c(x1,x2)
   y = c(y1,y2)

# create data frame of information to display in interactive  
   xy.lbls = list()
   xy.lbls$test = rep(c("a","b","c","d","e","f","g"),2)
   xy.lbls$num = 1:14
   xy.lbls = as.data.frame(xy.lbls)

# create plot.call for graph
   plot.calls = "plot(x1,y1,col='green', pch=3, cex=1.5); points(x2,y2,
pch=4, cex=1.5, col='purple')"


#
# Note this plot call could have also been run with 
#
#   plot.calls = "plot(x1,y1,col='green', pch=3, cex=1.5)"
#  
#  and then setting the
#        plt.extras$plot1 = "points(x2,y2,pch=4, cex=1.5, col='purple')"


#set up temporary directory
direct = paste(tempdir(),"/",sep="")
direct




# run sendxy
# note: we have already figured out appropriate up.left and low.right
#      values. if these were not known, the function should be run
#      with bound.pt=T (and maybe paint=T) to find pixil
#      locations
#
# The up.left and low.right values are correct if run in 
#  unix/linux environment - for window users the coordinates will not be
#  correct

  sendxy(plot.call = plot.calls, x=x, y=y,
         xy.lbls=xy.lbls, plt.extras=NA,
         bound.pt=FALSE, source.plot=NA, paint=FALSE,
         img.prog=NA,fname.root="testXY",dir=direct,
         up.left=c(124,130),low.right=c(713,883))

lshep/sendplot documentation built on Nov. 18, 2017, 5:10 p.m.