API for lucidif/HiCeekR
GUI for Hi-C data analysis
| Global functions | |
|---|---|
| CaTCH_TADs | Source code |
| DiffHiC_BinningV2_Server | Man page Source code |
| DiffHiC_BinningV2_UI | Man page Source code |
| EpigeneticFeatures_Server | Man page |
| EpigeneticFeatures_UI | Man page |
| FilmodServer | Man page Source code |
| FilmodUI | Man page Source code |
| HCRobserveEvent | Man page Source code |
| HCRprjManager | Man page Source code |
| HCRread | Man page |
| HCRunlist | Man page |
| HCRwrite | Man page |
| HMM_postProcessing_Server | Man page |
| HMM_postProcessing_UI | Man page |
| HiCeekR | Man page |
| HiCsegTADs | Source code |
| ICEnormalization | Source code |
| LGFnormalization | Source code |
| TADsV2_Visualization_Server | Man page Source code |
| TADsV2_Visualization_UI | Man page Source code |
| TopDomTADs | Source code |
| as.brute.matrix | Man page |
| as.sym.matrix | Man page Source code |
| bamMatching | Man page |
| bamPca | Man page |
| bamToDataFrame | Man page |
| bck_diffHic_Normalization_Server | Man page Source code |
| bck_diffHic_Normalization_UI | Man page Source code |
| bckdiffHic_Normalization_Server | Source code |
| bckdiffHic_Normalization_UI | Source code |
| bed2track | Source code |
| buildCIM | Source code |
| busyIndServer | Man page Source code |
| busyIndUI | Man page Source code |
| calcAIC | Source code |
| calcBFMatrix | Source code |
| callModuleDescription | Man page Source code |
| chft | Source code |
| chromoR_Normalization_Server | Man page Source code |
| chromoR_Normalization_UI | Man page Source code |
| cht | Source code |
| combineToSingleMatrix | Source code |
| compareCIM | Source code |
| convolveIter | Source code |
| correctCIM | Source code |
| correctData | Source code |
| correctPairCIM | Source code |
| detectChromos | Man page Source code |
| detectMatrixCoordinate | Man page Source code |
| diffHic_Normalization_Server | Man page Source code |
| diffHic_Normalization_UI | Man page Source code |
| directionalityIndex_postProcessing_Server | Source code |
| directionalityIndex_postProcessing_UI | Source code |
| directoryInput | Man page Source code |
| errorFunc | Man page Source code |
| expandMatrix | Source code |
| extractContact | Man page |
| fillMatrix | Source code |
| findChangePointsForLevel | Source code |
| findOptimalPositionWithScaleConstriant | Source code |
| findOptimizedCP | Source code |
| findRegionInBint | Man page |
| findScaleConfidenceRange | Source code |
| findSigPosScale | Source code |
| findWaveletMaximaByScale | Source code |
| folderFrame | Man page Source code |
| folderList | Man page |
| getOverlap | Source code |
| hcrBck | Man page Source code |
| hmmDI | Man page |
| importAnnotation | Man page |
| importChrFromFragList | Man page |
| javaNs | Man page Source code |
| mainNav | Man page Source code |
| makeBranch | Man page Source code |
| makeConfig | Man page Source code |
| makeHCRan | Man page Source code |
| makeHCRprj | Man page |
| makeHCRwd | Man page Source code |
| makeInset | Source code |
| matrixExport | Man page |
| matrixToVec | Source code |
| matrixWithNames | Man page |
| mergeBed | Man page Source code |
| moduleBranchPanel | Man page Source code |
| moduleRestartPanel | Man page Source code |
| moduleStartPanel | Man page Source code |
| moduleStartPanel2 | Man page Source code |
| moduleTemplate_Server | Man page Source code |
| moduleTemplate_UI | Man page Source code |
| moduleTest | Man page Source code |
| myConv | Source code |
| networksV2_Visualization_Server | Source code |
| networksV2_Visualization_UI | Source code |
| obtainName | Man page |
| obtainWd | Man page |
| padding | Source code |
| pcaMatrixModel | Man page |
| pca_postProcessing_Server | Man page |
| pca_postProcessing_UI | Man page |
| pointin | Man page Source code |
| predictTADs | Man page Source code |
| preprocessMaxima | Source code |
| prjManPanel_analysisSettings | Man page Source code |
| prjManPanel_anlysisInputType | Man page Source code |
| prjManPanel_inputBAM | Man page Source code |
| prjManPanel_inputMatrix | Man page Source code |
| prjManPanel_inputMulti | Man page Source code |
| prjManPanel_loadProject | Man page Source code |
| prjManPanel_newProject | Man page Source code |
| prjManPanel_prjSelector | Man page Source code |
| prjManPanel_reset | Man page Source code |
| prjManPanel_welcome | Man page Source code |
| prjMan_UI | Source code |
| prjMan_server | Source code |
| prjManagerMainUI | Man page Source code |
| prjSettings_Server | Man page Source code |
| prjSettings_UI | Man page Source code |
| readDirectoryInput | Man page Source code |
| refGenomeEdit | Man page Source code |
| regionsInMatrix | Man page |
| restartFrom | Man page Source code |
| searchTicks | Man page |
| segmentCIM | Source code |
| selectFile | Man page |
| setHCRwd | Man page Source code |
| shiftWaveletCoeff | Source code |
| shinyDirPath | Man page Source code |
| shinyFilesPath | Man page Source code |
| sum_Server | Man page Source code |
| sum_UI | Man page Source code |
| test | Man page Source code |
| testInfoTable | Man page Source code |
| tickOptions | Man page |
| ticksNames | Man page |
| updateDirectoryInput | Man page Source code |
| zScore | Man page |
