read_fasta: 'read_fasta'

In ludwigHoon/minSNPs: Resolution-Optimised SNPs Searcher

read_fasta

Description

read_fasta is used to read fasta file, implementation similar to seqinr, but much simpler and allow for spaces in sample name.

Usage

read_fasta(file, force_to_upper = TRUE, bp = SerialParam())

Arguments

file	file path
force_to_upper	whether to transform sequences to upper case, default to TRUE
bp	is the biocparallel backend, default to serialParam, most likely sufficient in most scenario

Value

Will return list of named character vectors.

ludwigHoon/minSNPs documentation built on March 25, 2024, 11:54 a.m.