Files in lukatrkla/lanpAnalysis
lanpAnalysis Analyzes HLA-I-binding Neoantigens Significant for Lung Adenocarcinoma Immunotherapy
.Rbuildignore
.Rproj.user/BC532E7B/cpp-definition-cache
.Rproj.user/BC532E7B/pcs/files-pane.pper
.Rproj.user/BC532E7B/pcs/source-pane.pper
.Rproj.user/BC532E7B/pcs/windowlayoutstate.pper
.Rproj.user/BC532E7B/pcs/workbench-pane.pper
.Rproj.user/BC532E7B/rmd-outputs
.Rproj.user/BC532E7B/saved_source_markers
.Rproj.user/shared/notebooks/patch-chunk-names
.gitattributes
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/data.R
R/graph_affinity.R
R/mutation_gene_data.R
R/mutation_positions.R
R/patient_affinity_visualizer.R
R/patient_location_visualizer.R
R/patient_neoantigen_list.R
R/plot_mutation_location.R
R/runlanpAnalysis.R
R/surrounding_peptides.R
README.Rmd
README.md
data/RANBP9mutated.rda
data/graph_affinity_solution.rda
data/lungData.rda
data/mutation_gene_data_solution.rda
data/mutation_positions_solution.rda
data/patient_affinity_visualizer_solution.rda
data/patient_location_visualizer_solution.rda
data/plot_mutation_location_solution.rda
data/solution_patient_neoantigen_list.rda
data/surrounding_peptides_solution.rda
data/testingGeneSet.rda
data/tp53mutated3times.rda
inst/CITATION
inst/extdata/location_plot.png
inst/extdata/noColorGraph.png
inst/extdata/plotWithColor.png
inst/extdata/plotWithConfidence.png
inst/shiny_scripts/app.R
lanpAnalysis.Rproj
man/RANBP9mutated.Rd
man/figures/README-pressure-1.png
man/graph_affinity.Rd
man/graph_affinity_solution.Rd
man/lungData.Rd
man/mutation_gene_data.Rd
man/mutation_gene_data_solution.Rd
man/mutation_positions.Rd
man/mutation_positions_solution.Rd
man/patient_affinity_visualizer.Rd
man/patient_affinity_visualizer_solution.Rd
man/patient_location_visualizer.Rd
man/patient_location_visualizer_solution.Rd
man/patient_neoantigen_list.Rd
man/plot_mutation_location.Rd
man/plot_mutation_location_solution.Rd
man/runlanpAnalysis.Rd
man/solution_patient_neoantigen_list.Rd
man/surrounding_peptides.Rd
man/surrounding_peptides_solution.Rd
man/testingGeneSet.Rd
man/tp53mutated3times.Rd
tests/testthat.R
tests/testthat/test-graph_affinity.R
tests/testthat/test-mutation_gene_data.R
tests/testthat/test-mutation_positions.R
tests/testthat/test-patient_affinity_visualizer.R
tests/testthat/test-patient_location_visualizer.R
tests/testthat/test-patient_neoantigen_list.R
tests/testthat/test-plot_mutation_location.R
tests/testthat/test-surrounding_peptides.R
vignettes/.gitignore
vignettes/lanpAnalysis.Rmd
