patient_location_visualizer: Visualize the Patient's Peptide Locations/Affinities for...
In lukatrkla/lanpAnalysis: lanpAnalysis Analyzes HLA-I-binding Neoantigens Significant for Lung Adenocarcinoma Immunotherapy
Description
Usage
Arguments
Value
Examples
View source: R/patient_location_visualizer.R
Description
Produce a graphical output portraying a set of gene's neoantigen positions
within their respected genes, as well as predicted percentage ranks for their
present mutant neoantigen peptides (which have HLA alleles affinities
information available in the lung cancer neoantigen database.)
Usage
1
patient_location_visualizer(geneSet, colNum = 1, confidence = 0)
Arguments
geneSet
A data.frame of gene names and associated gene peptide
sequence.
colNum
The number of columns you wish the scatterplots to be in.
confidence
By Default, confidence is set to 0. If it is set to 1, all
subsequent affinity scatterplots will be coloured according to the
confidence level of the neoantigen.
Value
status, 1 for failure, 0 for success.
Examples
1
lukatrkla/lanpAnalysis documentation built on Jan. 1, 2021, 8:26 a.m.
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Description Usage Arguments Value Examples
View source: R/patient_location_visualizer.R
Description
Produce a graphical output portraying a set of gene's neoantigen positions within their respected genes, as well as predicted percentage ranks for their present mutant neoantigen peptides (which have HLA alleles affinities information available in the lung cancer neoantigen database.)
Usage
1 | patient_location_visualizer(geneSet, colNum = 1, confidence = 0)
|
Arguments
geneSet |
A data.frame of gene names and associated gene peptide sequence. |
colNum |
The number of columns you wish the scatterplots to be in. |
confidence |
By Default, confidence is set to 0. If it is set to 1, all subsequent affinity scatterplots will be coloured according to the confidence level of the neoantigen. |
Value
status, 1 for failure, 0 for success.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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