plot_mutation_location: Visualize the Gene's Peptide Locations/Affinities for...
In lukatrkla/lanpAnalysis: lanpAnalysis Analyzes HLA-I-binding Neoantigens Significant for Lung Adenocarcinoma Immunotherapy
Description
Usage
Arguments
Examples
View source: R/plot_mutation_location.R
Description
Produce a graphical output portraying a geneName's neoantigen positions, as
well as predicted percentage ranks for their present mutant neoantigen
peptides (which have HLA alleles affinities information available in the
lung cancer neoantigen database.)
Usage
1
plot_mutation_location(geneName, seq, confidence = 0)
Arguments
geneName
The string name of the gene.
seq
The string peptide sequence associated with the gene.
confidence
By default, confidence is set to 0. If it is set to 1,
scatterplot will be coloured according to the confidence level of the
neoantigens.
Examples
1
plot_mutation_location("EPB41L3", "RAMAIYKQSQ...", confidence=0)
lukatrkla/lanpAnalysis documentation built on Jan. 1, 2021, 8:26 a.m.
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Description Usage Arguments Examples
View source: R/plot_mutation_location.R
Description
Produce a graphical output portraying a geneName's neoantigen positions, as well as predicted percentage ranks for their present mutant neoantigen peptides (which have HLA alleles affinities information available in the lung cancer neoantigen database.)
Usage
1 | plot_mutation_location(geneName, seq, confidence = 0)
|
Arguments
geneName |
The string name of the gene. |
seq |
The string peptide sequence associated with the gene. |
confidence |
By default, confidence is set to 0. If it is set to 1, scatterplot will be coloured according to the confidence level of the neoantigens. |
Examples
1 | plot_mutation_location("EPB41L3", "RAMAIYKQSQ...", confidence=0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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