graph_affinity: Visualize a Gene's Mutant Peptide - HLA Allele Affinities

In lukatrkla/lanpAnalysis: lanpAnalysis Analyzes HLA-I-binding Neoantigens Significant for Lung Adenocarcinoma Immunotherapy

Description

Barplot a gene's predicted percentage ranks for its present mutant neoantigen peptides (which have HLA alleles affinities information available in the lung cancer neoantigen database.)

Usage

graph_affinity(geneName, seq, colorFlag = 0)

Arguments

geneName	The string name of the gene.
seq	The string peptide sequence associated with the gene.
colorFlag	By Default, colorFlag is set to 0. If it is set to 1, all subsequent affinity barplots will be coloured according to binding strength between the mutation and the HLA-Allele. If it is set to 2, all subsequent affinity barplots will be coloured according to confidence level between mutation and the HLA-Allele.

Examples

graph_affinity("TP53", "FSDLWC....", 1)

lukatrkla/lanpAnalysis documentation built on Jan. 1, 2021, 8:26 a.m.