mutation_positions: The Mutation Position Data.Frame Function
In lukatrkla/lanpAnalysis: lanpAnalysis Analyzes HLA-I-binding Neoantigens Significant for Lung Adenocarcinoma Immunotherapy
Description
Usage
Arguments
Value
Examples
View source: R/mutation_positions.R
Description
Analyzes seq for mutations in the lung cancer neoantigen database, for
neoantigens for pertaining to geneName, and returns a data.frame with the
information pertaining to where each neoantigen mutation was positioned in
seq, as well as where the mutation's length.
Usage
1
mutation_positions(geneName, seq)
Arguments
geneName
The string name of the gene.
seq
The string peptide sequence associated with the gene.
Value
data.frame
Examples
1
mutation_positions("ADGRA3", "TCAKSVTCTY...")
lukatrkla/lanpAnalysis documentation built on Jan. 1, 2021, 8:26 a.m.
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Description Usage Arguments Value Examples
View source: R/mutation_positions.R
Description
Analyzes seq for mutations in the lung cancer neoantigen database, for neoantigens for pertaining to geneName, and returns a data.frame with the information pertaining to where each neoantigen mutation was positioned in seq, as well as where the mutation's length.
Usage
1 | mutation_positions(geneName, seq)
|
Arguments
geneName |
The string name of the gene. |
seq |
The string peptide sequence associated with the gene. |
Value
data.frame
Examples
1 | mutation_positions("ADGRA3", "TCAKSVTCTY...")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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