patient_affinity_visualizer: Visualize a Patient's Mutant Peptide - HLA Allele Affinities

In lukatrkla/lanpAnalysis: lanpAnalysis Analyzes HLA-I-binding Neoantigens Significant for Lung Adenocarcinoma Immunotherapy

Description

Barplot a set of gene's predicted percentage ranks for their present mutant neoantigen peptides (which have HLA alleles affinities information available in the lung cancer neoantigen database.)

Usage

patient_affinity_visualizer(geneSet, colNum = 1, colorFlag = 0)

Arguments

geneSet	A data.frame of gene names and associated gene peptide sequence.
colNum	Number of Columns the resulting set of barplots will have
colorFlag	By Default, colorFlag is set to 0. If it is set to 1, all subsequent affinity barplots will be coloured according to binding strength between the mutation and the HLA-Allele. If it is set to 2, all subsequent affinity barplots will be coloured according to confidence level between mutation and the HLA-Allele.

Value

status, 1 for failure, 0 for success.

Examples

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lukatrkla/lanpAnalysis documentation built on Jan. 1, 2021, 8:26 a.m.