count.data: The count table of Montgomery and Pickrell data.

In lunge111/intSEQ: Differential Expression Analysis of RNA-seq Data with Integrated Likelihood Method

Description

RNA-seq count data from lymphoblastoid cell lines from 60 unrelated Caucasian individuals of European descent and 69 unrelated Nigerian individuals.

Usage

data("count.data")

Details

The data was obtained in tweeDEseqCountData package. We filtered the data such that each row has average count at least 1. There are 8124 genes passed the filter, 129 columns represent 60 CEU and 69 YRI individuals.

Source

https://bioconductor.org/packages/release/bioc/html/tweeDEseq.html

References

Juan R Gonzalez and Mikel Esnaola (2016). tweeDEseqCountData: RNA-seq count data employed in the vignette of the tweeDEseq package. R package version 1.12.0.

See Also

condition

Examples

data(count.data)
## maybe str(count.data) ; plot(count.data) ...

lunge111/intSEQ documentation built on May 20, 2019, 9:38 a.m.