show: Show the result of 'intSEQ'

In lunge111/intSEQ: Differential Expression Analysis of RNA-seq Data with Integrated Likelihood Method

Description

Print result of intSEQ

Usage

## S3 method for class 'intres'
show(intres, sortby = c("pvalue", "LFC", "no"), shownum = 20, ...)

Arguments

intres	An object returned by intSEQ.
sortby	Options of sorting the result. The default is "pvalue". See detail.
shownum	The number of genes want to display.
...	Other arguments that are currently not used.

Details

This function displays the result of intSEQ. The number of genes is specified by "shownum". When "sortby" equals to "pvalue", it means display genes with smallest p-value. "LFC" means display genes with largest log 2 fold change.

Author(s)

Yilun Zhang, David Rocke

See Also

intSEQ

Examples

data(count.data)
data(condition)
count=count.data[,1:10]
cond=rep(0:1,each=5)
res=intSEQ(count, cond)
show(res)

lunge111/intSEQ documentation built on May 20, 2019, 9:38 a.m.