mednorm: Median normalization method for limma trans.
In lunge111/intSEQ: Differential Expression Analysis of RNA-seq Data with Integrated Likelihood Method
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Rescale each column of the count matrix with the median of that column.
Usage
1
mednorm(mat)
Arguments
mat
The count table.
Value
A rescaled matrix with same dimension as mat.
Author(s)
Yilun Zhang, David Rocke.
References
Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM: Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods. 2008, 5: 613-619. 10.1038/nmeth.1223.
Examples
1
2
lunge111/intSEQ documentation built on May 20, 2019, 9:38 a.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Rescale each column of the count matrix with the median of that column.
Usage
1 | mednorm(mat)
|
Arguments
mat |
The count table. |
Value
A rescaled matrix with same dimension as mat.
Author(s)
Yilun Zhang, David Rocke.
References
Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM: Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods. 2008, 5: 613-619. 10.1038/nmeth.1223.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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