ICGS2toICGS1: ICGS2_to_ICGS1

In lyc-1995/DoubletDeconSeurat: Seurat wrappers with DoubletDecon

Description

This function converts the new ICGS2 expression file format to the ICGS1 format. In making this change, the cluster numbers (column 1 in the groups file) are retained and not the cluster names (column 2 in the groups file).

Usage

ICGS2toICGS1(rawDataFile, groupsFile, log_file_name = NULL)

Arguments

rawDataFile	ICGS expression or counts file (in ICGS expression file format).
groupsFile	ICGS groups file.
log_file_name	used for saving run notes to log file

Value

processed - data.frame of genes by samples with a row of cell clusters (column_clusters-flat) and a column of gene clusters (row_clusters-flat) when available.

groups - groups file with cell names matching the expression file.

lyc-1995/DoubletDeconSeurat documentation built on March 8, 2020, 5:47 a.m.